Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L14
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.67
04_02_0006 + 8455219-8457469,8457560-8457924 29 2.7
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 3.6
12_02_0412 - 18799217-18801061 28 4.7
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197... 28 4.7
12_02_0591 + 20864861-20867329 27 8.2
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 8.2
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 27 8.2
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.1 bits (67), Expect = 0.67
Identities = 24/67 (35%), Positives = 30/67 (44%)
Frame = -3
Query: 210 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 31
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 30 SELSVRA 10
S S A
Sbjct: 71 SSSSAAA 77
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 243 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 70
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 287 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 376
A N P +A N N G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414
>12_02_0412 - 18799217-18801061
Length = 614
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 352 VYSATDSVEVGYISDIWHISGGESLRCDVV 263
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>02_04_0519 +
23619084-23619198,23619468-23619559,23619655-23619735,
23620426-23620501,23620674-23620696
Length = 128
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 321 GTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAV 223
G LA+ IF + ++ W S+W+ FT A +
Sbjct: 63 GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 235 AGSCHLVSEPGDVCIRETY 179
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -2
Query: 484 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYIS 311
GVE+ GV+ LE +V+ V+ T + R+ +L + ++Y A D + E+ Y
Sbjct: 34 GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93
Query: 310 DIWHISGGESLRCDVVVIVVEEIHFAGS 227
I GE C E +A S
Sbjct: 94 LQQQIEKGEG--CSAAAANYPEASYASS 119
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -3
Query: 198 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 25
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 24 LSVRAPCA 1
+RA CA
Sbjct: 523 AQLRADCA 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,270
Number of Sequences: 37544
Number of extensions: 362312
Number of successful extensions: 1113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -