Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L13
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   3.4  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   4.4  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   4.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   5.9  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   5.9  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 17  TGWQANWEKFYAECLGDPQEISFVRVYGGSGITVYVGLFGKDVL*P 154
           T + AN EK  +    DPQ+ + ++   G+G++ ++ LF   ++ P
Sbjct: 351 TSFIANSEKENSSNFIDPQKYASIKFKNGNGVSKFMFLFTFGIVFP 396


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 312 WKSVACALHLKPCTAKSHSSLLCAEDCSRLVSSCREW 422
           +++    L L PC A S S+    ++CS   +S + W
Sbjct: 328 YQNFTYTLDLIPCNATSWSAYSLLKNCSDCANSYKNW 364


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 162 CSVGYSTSFPNSPTYTV--IPLPPYTRTKLISCGSPKH 55
           C+VGYS +  N P  TV  IP       KL+  G P++
Sbjct: 360 CAVGYSGAAVNPPATTVSFIPADGTEPLKLLVNGEPQN 397


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
 Frame = -1

Query: 171 WVGCSVGYSTSFPNSPTYTVIPLPP-----YTRTKLIS 73
           WV C V Y+T +    T   I  PP     Y +T  IS
Sbjct: 671 WVSCYVKYNTEYSGIATVFNITFPPILYGSYLKTSTIS 708


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 194 GARPEQAGGSVVQLATVRPSRTAQ 123
           G R E  GGS+  L + RPS   Q
Sbjct: 57  GERAEPLGGSIATLGSTRPSAKPQ 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,241
Number of Sequences: 5004
Number of extensions: 44616
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)