Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L13
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 30 1.5
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 29 3.4
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 28 4.5
03_05_0755 - 27462388-27463140 28 4.5
06_01_0465 - 3304417-3306834 28 6.0
02_03_0222 - 16565885-16566244,16568069-16568227 28 6.0
01_01_0939 - 7404209-7404490,7405057-7405368,7405470-7405609,740... 28 6.0
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 27 7.9
12_02_0686 - 22076741-22077085 27 7.9
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 27 7.9
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 27 7.9
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 27 7.9
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 27 7.9
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 27 7.9
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 27 7.9
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 171 WVGCSVGYSTSFPNSPTYTVIPLPPYTRTKLISCGSPK 58
W SV ST +P PT T I PPY + +S P+
Sbjct: 724 WNELSVSASTLYPWDPTSTYIHEPPYFKDMTMSPPGPR 761
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 339 SVKHTQHSSKYQSDNDSNSSEATED 265
S + T+HS YQ NDS+S T+D
Sbjct: 727 SDEETEHSPDYQESNDSSSRTDTDD 751
>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 863 PPKARPSKKVKGKGPRSTSVDSDEETQESPEYQESNDSSSRTETDD 908
>03_05_0755 - 27462388-27463140
Length = 250
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 472 VRRAHRACALSAAGARDHSRHDDTSRLQS 386
VRR H A L+A G DD RLQS
Sbjct: 155 VRRVHSAQELAAGGGHSRQCFDDRRRLQS 183
>06_01_0465 - 3304417-3306834
Length = 805
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 132 NSPTYTVIPLPPYTR-TKLISCGS 64
+SPT T++PL P TR TKL+S +
Sbjct: 151 DSPTDTLLPLQPMTRDTKLVSASA 174
>02_03_0222 - 16565885-16566244,16568069-16568227
Length = 172
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 354 QCKVLSVKHTQHSSKYQ-SDNDSNSSEATEDPKH*QN 247
QCK S KHT +SS+ S N + ++ T + +H N
Sbjct: 126 QCKGSSKKHTYYSSRCDVSGNSNGTNHLTSNEEHDNN 162
>01_01_0939 -
7404209-7404490,7405057-7405368,7405470-7405609,
7406226-7406289,7406378-7406616,7406957-7406983,
7407590-7407749
Length = 407
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 38 EKFYAECLGDPQEISFVRVYGGSGITVYVGLFGKDVL*PTEQPTHQPVQVVHRSG 202
E Y D ++ + G +G + GLF DV P+E P P H G
Sbjct: 164 ESIYVRAYEDRIDLLRAAIVGPAGTPYHDGLFFFDVRFPSEYPQSPPKVHYHSGG 218
>12_02_0925 - 24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 863 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 908
>12_02_0686 - 22076741-22077085
Length = 114
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 457 RACALSAAGARDHSRHDDTSRLQSSAH 377
RA AG+RD H+ RLQSS H
Sbjct: 76 RASEGPRAGSRDLEAHEPAQRLQSSCH 102
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 840 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 885
>07_03_0014 - 12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 1055 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 1100
>05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 984 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 1029
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 806 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 851
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 2196 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 2241
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 402 PAGCNPPRTVDCCAIWQCKVLSVKHTQHSSKYQSDNDSNSSEATED 265
P P + V V S + TQ S +YQ NDS+S T+D
Sbjct: 764 PPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDD 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,757
Number of Sequences: 37544
Number of extensions: 344595
Number of successful extensions: 1096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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