Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L13
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.93 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 339 SVKHTQHSSKYQSDNDSNSSEATEDPKH 256
           S+KH   +S Y    D N   +T D  H
Sbjct: 223 SIKHESDNSDYSHTTDENRHSSTLDIDH 250


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 345 PCTAKSHSSLLCAEDCSR 398
           PC  K+  + LCA  C +
Sbjct: 27  PCNCKAPETALCARRCQQ 44


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +3

Query: 324 ACALHLKPCTAKSHSSLLCAEDCSRLVSSCREW 422
           AC +H  P T  +   L   E    L ++   W
Sbjct: 441 ACRIHGSPATTAAPPQLPTEESVDALCNTLHHW 473


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 297 CPTDIWKSVACALHLK-PCTAKSHSSL 374
           CPT++  +V  ++H+K P  A + + L
Sbjct: 270 CPTNLGTTVRASVHIKLPKLAANRAKL 296


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 243 FPFALKLRGARIDQPERCT 187
           FP  L +   +ID+ ++C+
Sbjct: 386 FPSTLNIPSVKIDEDQKCS 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,152
Number of Sequences: 438
Number of extensions: 2962
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)