Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L09
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    29   0.70 
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    28   0.93 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   1.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   3.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.5  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   8.6  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    25   8.6  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.6  

>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 304 EPHGSTLNNNENYFWTDSRPEGFAFEIEA 390
           EPH S L++N+N+  +D   E F  +IEA
Sbjct: 122 EPHHSELHDNDNFQNSDINIESFKGDIEA 150


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 487 DQKIYEDGSIDQK-VKINTLCTVEWYEPDGATKLVPV 594
           D  IY  G +D   VK+N    V WY+P G    VPV
Sbjct: 226 DLSIYFGGDVDTSTVKVNR---VNWYDPCGKLAKVPV 259


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
 Frame = +1

Query: 283 FARRLTFEPHGSTLNNNENYFWTDSRPEGFAFEIEAVSVGDKFTIYDANHEPQGVLEV-I 459
           F+  L F+P   TL   +   +    P+G          GD   I + N +P    EV I
Sbjct: 505 FSSDLAFDPTHDTLQTPDGKAFKFRPPQGVELPSAGFIAGDSSYIPEPNPQPVPETEVTI 564

Query: 460 QQQKNQVELDQKI--YEDGSIDQ---KVKINTLCTVE 555
             + +++E  +    Y+ G ++     VK+   CT +
Sbjct: 565 DPKSDRLEALEPFEPYQGGEMENLKVAVKVKGKCTTD 601


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 435 TPRRIGSYTAAEEPSRIRSEDIRRWV-H*SKSQDQ 536
           +PRR+ +Y++A +P     ED+ R +   S SQ+Q
Sbjct: 57  SPRRLSNYSSAVDPRTTSLEDVPRLILTRSNSQEQ 91


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 324 ESRTVGFKCESASK-STTDGLERECLPSEQVPRLH**R*CVDSLHRSNFVSESGSNSRIN 148
           E+   G K   A+K S T+  E+    +++  RL       +   +    SESGSN  +N
Sbjct: 164 ENEPAGVKSNEATKPSVTEEKEKNAEQNKRRERLSISHIVTELAKKDEVSSESGSNEIVN 223

Query: 147 VHPNNRHL 124
               N  L
Sbjct: 224 AKLKNEQL 231


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 210 TTSISEAAVLVRREGTHAPVHRSWICSP 293
           T       +L+R  G+  P H  W+ +P
Sbjct: 133 TKPFDAIGILIRHPGSAIPAHTMWVVNP 160


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 454 VIQQQKNQVELDQKIYEDGSIDQKVKINTLCTVEWYEPDGATKLVPV 594
           V++Q  +  +L +    D  ID  +K+N    VEW +P G    +PV
Sbjct: 237 VVEQGTHFCDLSRYFGGDVEIDS-IKVNR---VEWDDPSGKLNAMPV 279


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 433 EPQGVLEVIQQQKNQVELDQKIYEDGSIDQKVKINTL 543
           EP+G +E  + Q+ Q+  D++   +  + + VKI  L
Sbjct: 137 EPEGEVETAEVQEPQIVSDEEYTMEEEVAEPVKIPVL 173


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 266 SPSVVDLLADSHLNPTVLLSII 331
           SPS++ L A  H NPT+ L  I
Sbjct: 215 SPSIIALGAIYHTNPTICLQYI 236


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 131 RLLGCTLILELEPDSDTKLDRCRLSTHYLYQ*SRGTCSEGRHSRSSPSV 277
           R  GC++ L + PD     +RC  +++  ++  +G  ++GR    SP++
Sbjct: 416 REAGCSMCLGMNPDQLKPYERCASTSNRNFEGRQG--AKGRTHLVSPAM 462


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 418 YDANHEPQGVLEVIQQQKNQVELDQKIYEDGSIDQKVKINTLC 546
           YD     Q   +++Q+++ +   +Q IYED  +    +++ LC
Sbjct: 862 YDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLC 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,913
Number of Sequences: 5004
Number of extensions: 51937
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)