Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L09
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0005 - 7308380-7308745 31 0.95
07_01_0816 + 6526638-6527567,6527993-6528028 30 1.3
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 30 1.7
12_02_0882 - 23978169-23979251 29 2.9
12_01_0786 - 7181513-7181635,7181898-7182047,7184699-7184778,718... 29 2.9
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 29 2.9
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 28 5.1
01_05_0372 + 21541220-21541457,21541832-21541912,21542027-215420... 28 6.7
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 27 8.9
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 27 8.9
>05_03_0005 - 7308380-7308745
Length = 121
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 611 KMATPVTGTNFVAPSGSYHSTVHSVLILTF*SMDPSSYI 495
++A+P TG+N P+ S T++ + F + DPS+Y+
Sbjct: 32 QIASPCTGSNLPTPTSSISPTINHSGLHQFVAADPSTYM 70
>07_01_0816 + 6526638-6527567,6527993-6528028
Length = 321
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 391 VSVGDKFTIYDANHEPQGVLEVIQQQKNQVELDQKIYEDGSIDQKVKINTLCTVE---WY 561
V+ G + + + N + + E+IQ++KNQ+E D D D+ + C+++
Sbjct: 231 VATGPRNVLANRNKVERIIEEIIQERKNQIETDMMSGNDDVGDKAAVESKSCSLDVLLRL 290
Query: 562 EPDGATKLVPVTGVAI 609
+ +G T +P+T I
Sbjct: 291 QKEGGTP-IPITNQVI 305
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 157 RVRTGFRYKVRPMQAIDALPLSVKPRYLFGGKALTLQSIGRG----FARRLTFEPHGSTL 324
R+R F + + + I LP + P +FG TL+S GRG +FEP S
Sbjct: 343 RIRGAFSFGAQNLSQILMLPTDLIPTEIFGFFVNTLKSHGRGKRSDVGNNGSFEP--SLD 400
Query: 325 NNNENYFWTDS 357
+E W DS
Sbjct: 401 PESEYALWEDS 411
>12_02_0882 - 23978169-23979251
Length = 360
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 421 DANHEPQGVLEVIQQQKNQVELDQKIYEDGSIDQKVKINTLCTVEWYEPDG 573
D N QG V+Q QKN++ LD +++ S D +V TL +PDG
Sbjct: 219 DTNIHDQGHPSVMQMQKNELSLDLLPHKNSS-DHEVP--TLSVSSMDDPDG 266
>12_01_0786 -
7181513-7181635,7181898-7182047,7184699-7184778,
7185710-7186098,7186499-7186628,7186793-7187183
Length = 420
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = +1
Query: 58 LLDASTLGDVPAVYKVPQPAPHQMPVIG 141
LLD S LGDV P PAP QM V G
Sbjct: 35 LLDLSVLGDVDDDGAPPAPAPVQMSVDG 62
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +1
Query: 286 ARRLTFEPHGSTLNNNENYFWTDSRPEGFAFEIEAVSVGDKFTIYDANHEPQGVLEVIQQ 465
+R+ F+P G+ N+EN F TD +E + + + + +GV I
Sbjct: 16 SRQGVFKPFGAAYGNSENAF-TDESEVNLHQRLEKLYLSTRAAKHFQRDIVRGVEGYIVT 74
Query: 466 QKNQVELDQKIYEDGSIDQKVKINTLCT 549
QV++ K+ +D QK CT
Sbjct: 75 GSKQVDIGNKLSDD---SQKYGTGNTCT 99
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 157 EDQCTPQ*PAFDAVQAVELCKPQAHLPEYWHQVRP 53
+DQC A AVE P A L Y H+++P
Sbjct: 142 QDQCAQTAAALATAAAVEASAPTADLASYIHKLQP 176
>01_05_0372 +
21541220-21541457,21541832-21541912,21542027-21542092,
21543050-21543178,21544619-21544674,21545451-21545732
Length = 283
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 163 RTGFRYKVRPMQAIDALPLSVKPRYLFGGK 252
RT +Y V+ M+ + VKPRY FG +
Sbjct: 105 RTALKYAVKTMREGEEAIFIVKPRYAFGAQ 134
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 104 FHSLHRIKCRLLGCTLILELEPDSDTKLD 190
F SL R+ C +LE EP+S KLD
Sbjct: 817 FRSLTYFSLRIKRCGTLLEFEPESMPKLD 845
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 151 DPRVRTGFRYKVRPMQAIDALPLSVKPR 234
DP +R G RY+++ M ID L +++ R
Sbjct: 365 DPELRQGLRYQLKRMSDIDRLTHALRKR 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,583
Number of Sequences: 37544
Number of extensions: 343514
Number of successful extensions: 977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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