Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L09
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z83222-2|CAB54214.2|  211|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    27   8.0  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 283 FARRLTFEPHGSTLNNNENYFWTD 354
           F   L + PHG T++NN +Y+ TD
Sbjct: 119 FGAGLFYMPHGLTIDNNGDYWVTD 142


>Z83222-2|CAB54214.2|  211|Caenorhabditis elegans Hypothetical
           protein E01B7.2 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 379 EIEAVSVGDKFTIYDANHEPQGVLEVIQQQKNQ 477
           EI  +   D+F I+D N EPQ +  ++ ++K +
Sbjct: 142 EIIKLITNDRFEIHDLNIEPQPIQPILAEKKRK 174


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +2

Query: 95  FTKFHSLHRIKCRLLGCTLILELEPDSDTKLDRCRLSTHYLYQ*SRGTCSEGRHSRSSPS 274
           F +FH  H  +  +L  +   E E    TKL  C + +  + + SR       +   + S
Sbjct: 430 FMRFHRAHLSRRLILEMSADQEKEEMMVTKLRECGMPSDAVNKLSRMLQDIELNKDMNSS 489

Query: 275 VVDLLADSHLNPTVLLSIITRIISGPTRGQKGS-RSRLKL 391
               L  ++ N ++  SI  ++++G   G+ GS R R  L
Sbjct: 490 FKKALTGTNNNKSIADSINMKVLNGGAWGRGGSERIRFSL 529


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 364 EGFAFEIEAVSVGDKFTIYDANHEPQ 441
           EG+  ++ + ++G +FT+YD+   P+
Sbjct: 245 EGYCAKVRSNALGTQFTVYDSGQNPK 270


>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 286 ARRLTFEPHGSTLNNNENYFWTDSRPEGFAFEIEAVSVGDKFTIYDANHEPQGVLEVIQQ 465
           ARR    P     +  + +FWTD    G A  +   S G    I D  + P GV   + Q
Sbjct: 118 ARRKGSCPRAGICSPRDTFFWTDKHTRGTAGFV--FSPGQPDGITDGYNGPWGVQSCVHQ 175


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 364 EGFAFEIEAVSVGDKFTIYDANHEPQ 441
           EG+  ++ + ++G +FT+YD+   P+
Sbjct: 245 EGYCAKVRSNALGTQFTVYDSGQNPK 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,969
Number of Sequences: 27780
Number of extensions: 292096
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)