Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L08
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    31   0.059
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    31   0.10 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   3.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   3.9  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   5.2  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   5.2  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    24   9.0  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 31.5 bits (68), Expect = 0.059
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 34  WNALGS*TTSNSPSL*RPKKS*VSS--VRNRLKSSMGLGNSSRTSSTTLARP---SKPTR 198
           +N + S  TS SPS    + S VSS  V  RL+ S+     SR+ S +L  P   S  TR
Sbjct: 285 FNVISSYETSASPSTVIDQSSQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDSLFTR 344

Query: 199 ASFKSILMGNTSLQRRS 249
           AS K +    +   RRS
Sbjct: 345 ASIKPLKPSQSPNSRRS 361


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 51  LNNKQFALALTPEEVLSLVSPQPSKKFYG-PW 143
           LN  +F + L  ++++ +  P+P K F+G PW
Sbjct: 267 LNRSKFDVVLVEDDLIYMKGPRPKKSFFGLPW 298


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 18  PYLLQMERPRLLNNKQFALALTPEEVLSLVSPQPSKKFYG 137
           P  +    P+L          TP +VL  +SP+ + KF G
Sbjct: 455 PSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSPKVAPKFQG 494


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 271 LSSFRLIMKRRWMSTDGCLESFQGDTSCLKVVMSTLSS 384
           LSS + ++K  W   D   +     TSC+  ++S+L S
Sbjct: 554 LSSCKNLLKVLWDCLDDVKDDLSSSTSCVMDLLSSLCS 591


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  EEVLSLVSPQPSKKFYGPWKQLSNLLHDSCSTIKAD 194
           ++ + L+ P P++K     + LS+L  + CS I+ D
Sbjct: 269 QDPIWLILPDPTQKIPPLIQTLSSLFSELCSVIEGD 304


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 84  PEEVLSLVSPQPSKKFY 134
           P+ ++SL +P+P  KFY
Sbjct: 183 PDTLISLTAPKPCSKFY 199


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 PSKKFYGPWKQLSNLLHDS 173
           PSK+ +GPW  +S  L D+
Sbjct: 51  PSKRLWGPWNFISFWLADA 69


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 57  NKQFALALTPEEVLSLV---SPQPSKKFYGP 140
           NK+F LAL P+E+  LV   + +PS K   P
Sbjct: 178 NKKFGLALAPDEIDYLVECYTSEPSLKSREP 208


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 188 FDGRARVVEEVRELFPRPIELFRRLRTDET*D 93
           FDG    +    +LFP  ++ F    T+E  D
Sbjct: 176 FDGATLTIFLAEDLFPNAVKYFTEAMTEEASD 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,018
Number of Sequences: 5004
Number of extensions: 36842
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)