Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L06
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 70 1e-13
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 62 3e-11
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 61 7e-11
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 60 2e-10
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 60 2e-10
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 59 3e-10
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 56 3e-09
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 56 3e-09
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 55 4e-09
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 54 7e-09
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 54 1e-08
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 54 1e-08
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 51 7e-08
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 51 7e-08
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 50 1e-07
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 49 4e-07
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 41 1e-04
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 38 7e-04
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 33 0.020
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 33 0.026
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 31 0.080
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 4.0
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 25 4.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 4.0
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 4.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 5.2
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 25 6.9
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 24 9.1
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 24 9.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 9.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 9.1
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 24 9.1
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 70.1 bits (164), Expect = 1e-13
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKE-AEAKFQKLKEAKETLCDPNKR 226
DYYA+L +N++ +QI +Y LALQ+HPD+N GD+E A +FQ+L+ A E L D KR
Sbjct: 12 DYYAILKLQKNATFQQIRKQYLFLALQYHPDRNPGDEERAVKRFQRLQLAHEVLSDATKR 71
Query: 227 ALYDK 241
+YD+
Sbjct: 72 LIYDQ 76
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 62.5 bits (145), Expect = 3e-11
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = +2
Query: 62 LLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRALYDK 241
+LG +++S +I Y+ L Q HPDKN G++EA+ KF ++ +A E L DP +R +YD
Sbjct: 11 ILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDA 70
Query: 242 WRQSGI 259
+ + G+
Sbjct: 71 YGEEGL 76
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 61.3 bits (142), Expect = 7e-11
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 32 QRNPDDDYYALLGCDENSSVEQITAEYKLLALQHHPDKN-DGDKEAEAKFQKLKEAKETL 208
QR D DYY +L ++ + I Y+ LA+ +HPDKN + + A KFQKL EA + L
Sbjct: 3 QRVVDRDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVL 62
Query: 209 CDPNKRALYDKWRQSG 256
DP R YDK + G
Sbjct: 63 SDPKLREKYDKLGKVG 78
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/72 (37%), Positives = 45/72 (62%)
Frame = +2
Query: 23 INYQRNPDDDYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKE 202
+ +++ D+Y +LG + ++ +I Y+ LAL +HPDKN G+ EAEA+F+++ EA
Sbjct: 340 LELKKSKRKDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAYT 399
Query: 203 TLCDPNKRALYD 238
L DP R +D
Sbjct: 400 ILSDPESRRRFD 411
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEA--KFQKLKEAKETLCDPNK 223
DYY +LG + SS +I +Y L L++HPD+N G +EAE +FQ +++A E L DP
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPG-REAEVLPQFQLIQKAHEVLKDPKL 70
Query: 224 RALYDKWR 247
R L+D+ R
Sbjct: 71 RELFDQRR 78
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 58.8 bits (136), Expect = 3e-10
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 DDDYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKE-AEAKFQKLKEAKETLCDPN 220
D +YY LLG +++ I Y+ LA+++HPDKN D + A KFQK+ EA + L D
Sbjct: 6 DTEYYDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEK 65
Query: 221 KRALYDKW 244
R+ YD++
Sbjct: 66 LRSQYDQF 73
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 55.6 bits (128), Expect = 3e-09
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRA 229
DYY LLG +E++ ++I ++ +L++HPDKN D +A KF L+ A L D R
Sbjct: 9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRK 68
Query: 230 LYDKWRQSGIA 262
YD R + +A
Sbjct: 69 AYDSERFAKLA 79
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 55.6 bits (128), Expect = 3e-09
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRA 229
D Y LG +++S +I + Y LA Q+HPD N DK A+ KF ++K+A E L DP K+
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANP-DKAAQDKFVEIKQAYEVLQDPKKKK 144
Query: 230 LYDKW 244
+D +
Sbjct: 145 AFDTY 149
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 55.2 bits (127), Expect = 4e-09
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = +2
Query: 44 DDDYYALLGCDENSSVEQITAEYKLLALQHHPDK-NDGDKEAEAK--FQKLKEAKETLCD 214
D D Y++LG ++++S E I Y+ ALQHHPD+ +D +K+ EA+ F K+ A L D
Sbjct: 29 DIDPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSD 88
Query: 215 PNKRALYDKWRQ-----SGIALGYKQWL 283
+R YDK Q + I +K+WL
Sbjct: 89 KKRRKHYDKTGQLRETDADIDFDWKEWL 116
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 54.4 bits (125), Expect = 7e-09
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +2
Query: 11 VDEIINYQRNPDDDYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLK 190
V +II Y+ + YY +L + + +I YK LALQ HPDKN EA F+ +
Sbjct: 103 VQKIIKYKNH---QYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPSADEA-FKMVS 158
Query: 191 EAKETLCDPNKRALYDK 241
+A + L DPN RA YD+
Sbjct: 159 KAFQVLSDPNLRAHYDR 175
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 54.0 bits (124), Expect = 1e-08
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEA--EAKFQKLKEAKETLCDPNK 223
+ Y LG ++++ +QI Y L+ HPD++ D++A E KFQ ++ A E L DP+K
Sbjct: 8 ELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVLSDPSK 67
Query: 224 RALYDKWRQSGI 259
+ +YD + + G+
Sbjct: 68 KEIYDNFGEQGL 79
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 53.6 bits (123), Expect = 1e-08
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 56 YALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRALY 235
Y +L D +S ++ Y+ LAL++HPDKN A KF+++ A E L D KRA Y
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKNPN---AGDKFKEISRAYEILADEEKRATY 64
Query: 236 DKWRQSGIALG 268
D++ + G+ G
Sbjct: 65 DRFGEEGLQGG 75
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 51.2 bits (117), Expect = 7e-08
Identities = 23/66 (34%), Positives = 40/66 (60%)
Frame = +2
Query: 44 DDDYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNK 223
D D Y +L + +S +++I A Y+ LALQ+HPD+N G ++ F ++ A L + +K
Sbjct: 7 DMDCYEILQVNHDSDLQEIKANYRKLALQYHPDRNPGIEDYNEIFSQINAAYNILSNDDK 66
Query: 224 RALYDK 241
R ++K
Sbjct: 67 RKWHEK 72
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 51.2 bits (117), Expect = 7e-08
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEA--KFQKLKEAKETLCDPNK 223
DYYA+L +S E+I YK AL+ HPD+ A A +FQ + EA L D ++
Sbjct: 4 DYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNSR 63
Query: 224 RALYDKWRQSGIA 262
RA YD+ S A
Sbjct: 64 RAQYDRESASSSA 76
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 50.4 bits (115), Expect = 1e-07
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 44 DDDYYALLGCDENSSVEQITAEYKLLALQHHPDKN--DGDKEAEAKFQKLKEAKETLCDP 217
D Y +L +S E+I YK LAL HHPDK +EA +F+ ++EA + L DP
Sbjct: 4 DTKLYDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDP 63
Query: 218 NKRALYDKW 244
R +YD +
Sbjct: 64 ESREMYDMY 72
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 48.8 bits (111), Expect = 4e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +2
Query: 44 DDDYYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNK 223
D Y L +S ++ Y+ LAL++HPDKN E KF+++ A E L DP +
Sbjct: 4 DTKLYDCLEVRPEASEAELKKAYRKLALKYHPDKNPN---GEKKFKEISLAYEVLSDPQR 60
Query: 224 RALYDKW 244
R LYD++
Sbjct: 61 RKLYDQY 67
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 40.7 bits (91), Expect = 1e-04
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +2
Query: 50 DYYALLGCDE---NSSVEQITAEYKLLALQHHPDKN--DGDKEAEAKFQKLKEAKETLCD 214
D+YA+LG + + EQI + L+HHPDK G+ ++ F+ +++A E L D
Sbjct: 97 DHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILSD 156
Query: 215 PNKRALYD 238
P +R +D
Sbjct: 157 PVRRRQFD 164
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 37.9 bits (84), Expect = 7e-04
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 50 DYYALLGCDENSSVEQITAEYKLLALQHHPDK-----NDGDKEAEAKFQKLKEAKETLCD 214
D Y +LG + +SV+ + YK L+++ HPDK N +E E + ++ A L D
Sbjct: 98 DPYEILGIAKGTSVDDVRRHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITNAYRALTD 157
Query: 215 PNKRALY 235
R Y
Sbjct: 158 DKTRENY 164
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 33.1 bits (72), Expect = 0.020
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 53 YYALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKE 163
+Y LL +S+++I Y+ ++ +HPDKN KE
Sbjct: 41 FYELLEVPTKASIKEINRAYRKKSILYHPDKNPKSKE 77
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 32.7 bits (71), Expect = 0.026
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 56 YALLGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRALY 235
Y +L SV+ I Y+ +L HPDKN + +A F LK+A+ L + R
Sbjct: 33 YDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRESL 92
Query: 236 D 238
D
Sbjct: 93 D 93
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 31.1 bits (67), Expect = 0.080
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 206 LCDPNKRALYDKWRQSGIALGYKQW--LGMKDHVQQSMHWSKPNTKDR 343
LC + + +KWR+ G +G +W G +++V+ + +P+ +R
Sbjct: 840 LCKSRRLGILEKWRKMGSKIGTSEWDLKGGEEYVELMQQYVRPSLTNR 887
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 368 ALQNHPPTCDLWCWACSN 315
ALQ HP +LW AC +
Sbjct: 133 ALQKHPNNAELWVVACDH 150
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 50 DYYALLGCDENSSV--EQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNK 223
++Y++L + + ++I Y+ L HPDK ++KEA + L
Sbjct: 2 NHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKD 61
Query: 224 RALY 235
R Y
Sbjct: 62 RQQY 65
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 4.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 137 PDKNDGDKEAEAKFQKLKEAKETLCDPN 220
PD ND + + K +KLK++++ L + N
Sbjct: 50 PDSNDDSQSKKKKKKKLKKSQQPLNEEN 77
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 414 LRAAELLGPRLEGPEGFAESPSNMRSLVLGLLQCID 307
L ELLG + PE F N+R L+L L I+
Sbjct: 237 LNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLIN 272
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 128 QHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKR 226
Q H D + E + +K K++K L +PN++
Sbjct: 80 QSHYSDEDDENEKGSSGRKRKKSKNVLAEPNQQ 112
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 71 CDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKFQKLKEAKETLCDPNKRALYDKWRQ 250
CDE + T E +ALQ +G+KE + K +E + L + K+ Y K+
Sbjct: 14 CDEMNQKTPSTVEEIRIALQELGLSTNGNKEKLKRRWKFREKR--LEEKRKQERYQKFST 71
Query: 251 S 253
S
Sbjct: 72 S 72
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 66 WVAMKTQVLNK*LRSINCWPYNTTLIKTMVIKKQKLNFKNSRKLKRR 206
W T ++ + L ++TT I +KKQK N + + LKRR
Sbjct: 11 WKLASTNLMQQCLLLNKKSQFHTTCI-LQGLKKQKANQRRKQNLKRR 56
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 9.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 137 PDKNDGDKEAEAKFQKLKEAKETLCDPNKRA 229
P N D ++KF L KE+L D KRA
Sbjct: 177 PAINVNDSVTKSKFDNLFGCKESLVDGIKRA 207
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 65 LGCDENSSVEQITAEYKLLALQHHPDKNDGDKEAEAKF 178
+ ++ S+ EY ++Q HP+ G ++ E F
Sbjct: 399 VNANDGSNEGIYNTEYPFFSVQFHPESTPGPRDTEFLF 436
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 9.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 5 TGVDEIINYQRNPDDDYYALLGCDENSSVE---QITAEYKLLALQHHPDKNDGDKEAEAK 175
T V +IIN N DD+ LG + S+E ++ + P K + +K E
Sbjct: 35 TSVTKIINDSDNEDDENGMDLGRVASESLEGDAVVSIDINTEDSSLSPAKQENEKSPEGI 94
Query: 176 FQKLKEAKETLCDPNK 223
QK +E E L D K
Sbjct: 95 EQKYQE--EDLKDDKK 108
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 164 AEAKFQKLKEAKETLCDPN 220
+EAK KLKEA +C N
Sbjct: 60 SEAKVDKLKEAASKMCPAN 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,773
Number of Sequences: 5004
Number of extensions: 34561
Number of successful extensions: 131
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -