Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L04
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   1.5  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   3.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   3.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   3.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.1  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    23   8.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   8.1  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 104 PSLQWPRPRLWLKENNH 154
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 YKHEKIHKKVNE*LFSFSQSRGLGHCS 109
           Y H K  KKV E L + + SR +  CS
Sbjct: 214 YFHSKAEKKVTEFLRNRNWSRSITECS 240


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 191 YINMRKYIKKLMNDYF 144
           ++N+R YI+K MN+ F
Sbjct: 373 FLNLRSYIRKSMNNVF 388


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 141 FSQSRGLGHCSDGWTST 91
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 150 IIH*LFYVFSHVYIITFFVSYIHIILDSY 236
           II   F+ FS   +I FFVSY +II DSY
Sbjct: 448 IIASAFFGFS--LLIVFFVSYNYII-DSY 473


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   RYGDRFGGAVESLLGIGESWPENERRSHKCWSSRRY 113
           RYG  +G  V +L   GES P       +C S+  Y
Sbjct: 133 RYGWNYGSIVINLRDSGESLPPLFFHDDECISTIEY 168


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 76  SFSGQLSPIPRRDSTA-PPKRSP 11
           SFSG  S +P R STA   KR P
Sbjct: 636 SFSGSSSKLPVRPSTALTDKRKP 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,041
Number of Sequences: 5004
Number of extensions: 19733
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)