Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L04
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    27   2.3  
11_04_0047 + 12787845-12788004,12788297-12788940                       27   3.1  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    27   3.1  
06_01_1116 + 9197761-9199956                                           27   4.1  
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391     26   5.4  
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    26   7.2  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    26   7.2  
05_03_0072 + 8073201-8073360,8073899-8073975,8074554-8074688           26   7.2  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    26   7.2  

>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 117 HCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPH 10
           HCS G  ++   V+ +   FLQ L+  PRR +  PH
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPH 227


>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 192 LYKHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 82
           L K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 211 LAKYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = -1

Query: 136 PKPWPGPXXXXXXXXXXXXLSFSGQLSPIPRRDSTAPPKR 17
           PKP P P                G   P P R S  PP+R
Sbjct: 51  PKPQPAPEEAPAAAEEAAPSDDPGSRPPPPPRRSQGPPQR 90


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 60  SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 155
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
          Length = 598

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   RYGDRFGGAVESLLGIGESWPENERRSHKCWS 101
           R+    GGA+ + L IG SWP     SH  W+
Sbjct: 135 RFSHLTGGAIVNSLTIGVSWPP----SHDLWN 162


>12_02_0019 -
          12366259-12366819,12367653-12367685,12368294-12368363,
          12368582-12368712,12369627-12369673,12369803-12369879,
          12369963-12370027,12370105-12370191,12370300-12370389,
          12370972-12371037,12371608-12371664,12371749-12371850,
          12373018-12373554
          Length = 640

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 58 SPIPRRDSTAPPKRSP 11
          +P+  +DSTAPP R+P
Sbjct: 17 TPVDSQDSTAPPVRTP 32


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 58  SPIPRRDSTAPPKRSP 11
           +P+  +DSTAPP R+P
Sbjct: 706 TPVDSQDSTAPPVRTP 721


>05_03_0072 + 8073201-8073360,8073899-8073975,8074554-8074688
          Length = 123

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  ESWPENERRSHKCWSSRRYSGPGHG 131
           E+WP   + +   W SR  SG G G
Sbjct: 25  EAWPAGSKATTANWGSRISSGEGDG 49


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 141 FSQSRGLGHCSDGWTSTYDCVSHSLANFLQFLEGI 37
           + + R LG    G +ST  C+    +  LQFL G+
Sbjct: 441 YREKRRLGSQVGGASSTDSCIDQEKSVLLQFLAGL 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,743,031
Number of Sequences: 37544
Number of extensions: 135982
Number of successful extensions: 351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)