Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L02
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 235 DSPVEAIASWANG 197
           D  VEA+A WANG
Sbjct: 338 DKNVEALAKWANG 350


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 342 KLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKR 509
           KL  K      N  ND +     +  NS   ++ F +N+E    IN    D+ + +
Sbjct: 125 KLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQ 180


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 NSPHVCLMKSSRKTQI 162
           NSPH C  K+   T+I
Sbjct: 20  NSPHTCRTKNGDYTKI 35


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 624 LCQFLIKFVFPTSLKVNCIYE 562
           +  FL+ F     + +NC YE
Sbjct: 96  ISNFLMMFCMSPPMVINCYYE 116


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 438 LNFGKNEEAANIINTWVEDHTNKRIRNLVDP 530
           L F +  E   I+  W++    + I  L DP
Sbjct: 59  LRFEEVSEKYGILQNWMDKFRGEEIAILYDP 89


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 624 LCQFLIKFVFPTSLKVNCIYE 562
           +  FL+ F     + +NC YE
Sbjct: 62  ISDFLMMFCMSPPMVINCYYE 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,512
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)