Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L01
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   4.4  
AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   5.8  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 152 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 235
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical
           protein C50D2.6 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 420 ALKSWLSLWKRFTLPAARHFVTKPXGYEF 334
           A KS LSL KR  LP  RH+V      E+
Sbjct: 221 ACKSLLSLQKRTVLPERRHYVLPQASSEY 249


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 415 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 522
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 24  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 182
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,986
Number of Sequences: 27780
Number of extensions: 309928
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)