Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K24
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119...    29   2.2  
03_02_0383 + 7966929-7968951,7969085-7969104                           27   8.8  
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205...    27   8.8  

>02_01_0174 -
           1193696-1193726,1193822-1194175,1194307-1194542,
           1194629-1194741,1195963-1196161,1196427-1196513
          Length = 339

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 324 DSLPVSLLYLHNSKVSTTGIHLSMITLP 241
           D + VSLLYLH   V  TGI L  +  P
Sbjct: 32  DFISVSLLYLHKVTVRFTGIGLRRVACP 59


>03_02_0383 + 7966929-7968951,7969085-7969104
          Length = 680

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 450 DEERK*QYRRWLINTSYRIGPIDTLQLWHR 361
           DE  K Q RR L  +   IGP+ ++Q W R
Sbjct: 443 DELTKKQKRRALAKSRSEIGPMASMQWWER 472


>01_05_0607 +
           23619271-23619426,23619479-23619552,23619917-23620594,
           23620711-23620815,23620877-23621003,23621613-23621773,
           23621858-23622028,23622195-23622324,23622532-23622747,
           23626821-23627348
          Length = 781

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 24  IYLFIAVTADECPADREQPS 83
           +Y+F+AVTA  CP    QPS
Sbjct: 340 LYIFLAVTATICPLAVTQPS 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,302
Number of Sequences: 37544
Number of extensions: 271769
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)