Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K21
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    29   1.6  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    27   6.3  

>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 204 YFYCN*IRNSNILKNMY*FGTVCICIS*CQRNYPFPYMNFVFNVKTSCSY 55
           +FY +    S I   M+    V + I     N PFP+    F V  SCSY
Sbjct: 276 FFYRDKFGLSLITDGMHSLNAVLLLIDTFLNNMPFPWYRLAFFVFWSCSY 325


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 166 EKHVLVWYGLYLYFIMSKKLSISVYEFR 83
           E+H   WYGL + ++  +K   + + FR
Sbjct: 558 ERHYNAWYGLGVVYLRQEKFEFAEHHFR 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,182,784
Number of Sequences: 37544
Number of extensions: 188474
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)