Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K20
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   1.8  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   2.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   3.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.4  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   7.4  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    24   9.8  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   9.8  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 139 SSSRGIFEPPSEACHNPAHGHSTMLDERCVRRS 237
           S S G FE  S     PAH HS +L    V RS
Sbjct: 499 SISMGAFEQLSTPLEAPAHKHSAVLQPLEVNRS 531


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 421 LGLVISYNRDSKSFPVVRVSGHANVHPTGSFIYFC 317
           LGL     +D KSFP V    +A++H T  +I  C
Sbjct: 315 LGLYAMAYQDDKSFPKV----NADIHMTSKYINIC 345


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 172 HWAVQIFHVNWSQAVPIIFANNTA-SPR*PSQSLR*TRYKQNKEAYSSYKLIYYVYTE 2
           HW +Q    N + A  +  ++NTA S    S+SL  T  K+ +E  ++   +  V  E
Sbjct: 435 HWRIQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAIDFLQEVDVE 492


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +2

Query: 137 TPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRSIQDYHMDTLKYWDI 289
           T + +EY++  +  ++++H    +C T       V +I   H+  + + D+
Sbjct: 96  TVLALEYMDTDLHSMVVKHNRLDECTTRKIFRQIVHAIDYCHLHRVAHRDL 146


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 151 GIFEPPSEACHNPAHGHSTMLDERCVRRSS*KHPGLPYGYVKILGHRFSIPNWWKR 318
           GIF PP+EA H    G    L     + S+ K   +   ++ + G     P++W R
Sbjct: 230 GIFVPPAEAAHAAGGGRGPELIALSHKSSNSKFGTM--RFIIVEGTEKFKPDYWDR 283


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 138 VKPSQSSLLTIPPVRVNLRKVYDKQDINKTKKHI 37
           ++PS SS  ++PP  +N    +   D+ +T   I
Sbjct: 182 LEPSSSSSFSVPPESLNPTLSFQHNDVPQTDNFI 215


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +2

Query: 242 RSIQDYHMDTLKYWDIGSAFLIGGNAKVY---EGSGWVHVSV 358
           RSI  +H +T   W   SAF++      Y     S WV  +V
Sbjct: 199 RSILSWHNETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNV 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,253
Number of Sequences: 5004
Number of extensions: 44252
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)