Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_K20
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 29 1.8
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 29 1.8
12_01_0727 + 6446283-6449300 27 7.3
05_01_0244 - 1825141-1825155,1825329-1825416,1825435-1825742,182... 27 7.3
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 27 9.7
03_06_0539 - 34600323-34601273 27 9.7
03_06_0534 + 34570080-34571030 27 9.7
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 27 9.7
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 27 9.7
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 266 DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 391
+ ++Y+D L+GG E +G++ S+ H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 265 HMVILDASNSSGARIVRQALWS 200
HM ILD N G ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 203 PQCLTNDACAARVRSIQDYHMDTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRK 382
P CL DA A +V S++D H+ +I + +A V+ G+ + +P +
Sbjct: 658 PSCLMEDADALQVLSLKDNHLTGELPGNIKEGCAL--SALVFSGNS-IQGQLPRSLVACR 714
Query: 383 ALRITVIGNYK 415
L I IGN K
Sbjct: 715 NLEILDIGNNK 725
>05_01_0244 -
1825141-1825155,1825329-1825416,1825435-1825742,
1827084-1827128,1827198-1827614,1828345-1828818
Length = 448
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -1
Query: 454 FNASICSAVWLLGLVISYN---RDSKSFPVVRVS-GHANVHPT-GSFIYFCVS 311
F+A++ A+W L++ YN D P V H HP S I FC++
Sbjct: 186 FSAAVEKAIWKNSLLVDYNCSKNDGSVLPKEIVDLKHIRPHPQHASAIIFCIN 238
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 110 VSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQ-CLTNDACAARVRSIQDYHMDTLKYW- 283
+S D L P +V + KL + + P+ CLT+ A S + H T K W
Sbjct: 77 LSHDIVGRLMPHYVLWSGTYGKLFVYLYGSEPRLCLTDTALIKEFLSSKYAHA-TGKSWL 135
Query: 284 -DIGSAFLIGGNAKVYEGSGWVH 349
G+ IGG + G+ W H
Sbjct: 136 QRQGTKHFIGGGLLMANGARWAH 158
>03_06_0539 - 34600323-34601273
Length = 316
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 278 ILTYPYGNPGCF*LERRTHRSSSIVECPCAGL*QASLGGSNIPRELESSRP 126
+L Y +P E RT ++ + PC+G + + G++ P S+RP
Sbjct: 166 VLCKVYRSPRAVCAEARTAAAAKSADSPCSGSKRKADDGADHPEAPPSARP 216
>03_06_0534 + 34570080-34571030
Length = 316
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 278 ILTYPYGNPGCF*LERRTHRSSSIVECPCAGL*QASLGGSNIPRELESSRP 126
+L Y +P E RT ++ + PC+G + + G++ P S+RP
Sbjct: 166 VLCKVYRSPRAVCAEARTAAAAKSADSPCSGSKRKADDGADHPEAPPSARP 216
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 254 DYHMDTLKYWDIGSAFLIGGNAKVYEGSGW 343
D H + W + L+GG A Y G W
Sbjct: 2837 DSHQKSPSTWGATAKVLLGGRAWAYNGGAW 2866
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 320 KVYEGSGWVHVSVPTHAYNRKALRIT 397
K +E SGW+HVS PT ++ + IT
Sbjct: 226 KHFEHSGWIHVS-PTFDVHKLTIAIT 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,526
Number of Sequences: 37544
Number of extensions: 295041
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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