Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K20
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    29   1.6  
Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    28   3.7  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    28   3.7  
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    28   3.7  
AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    27   4.9  
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    27   6.5  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    27   6.5  
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 185 IQHTDTPQCLTNDACAARVRSIQDYHMD 268
           +QH+  P+ +  +AC+   +SI  YH++
Sbjct: 60  VQHSRMPRHMEQEACSLAAKSIMTYHLE 87


>Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  CLYLVYRKLCEG*RGLAVLLAKMIGTA*LQFTWN 155
           C  ++      G  GLA L+  +IGT  +++TW+
Sbjct: 347 CFLILTFMTFNGYTGLAFLIVNLIGTVFIEYTWD 380


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 116 KDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS----IQDYHMDTLKY 280
           + D+  L+ +  +Y N PV ++ +  T TP+ +T+     ++++    I  +  D LKY
Sbjct: 388 RPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKY 446


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 116 KDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS----IQDYHMDTLKY 280
           + D+  L+ +  +Y N PV ++ +  T TP+ +T+     ++++    I  +  D LKY
Sbjct: 388 RPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKY 446


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 368 AYNRKALRITVIGNYKSQQPNSRTNRR 448
           AYNR AL +    N K +QP ++T ++
Sbjct: 41  AYNRDALALLTDNNEKKKQPKNKTKKQ 67


>AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  CLYLVYRKLCEG*RGLAVLLAKMIGTA*LQFTWN 155
           C  ++      G  GLA L+  +IGT  +++TW+
Sbjct: 347 CFLILTFMTFNGYTGLAFLIVNLIGTVFIEYTWD 380


>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 269 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 352
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 269 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 352
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 84  EG*RGLAVLLAKMIGTA*LQFTWN 155
           +G R LA+++  +IGT+ ++ TW+
Sbjct: 398 QGSRNLAIIIINIIGTSFIELTWD 421


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 HVEYLNRPVKLVIIQHTDTPQ 208
           HVE L  P K VI++H  +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 HVEYLNRPVKLVIIQHTDTPQ 208
           HVE L  P K VI++H  +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 251 QDYHMDTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAY-NRKALRITVIGNYKSQQP 427
           QD  ++  ++  +     +GG+ K    SG  H     H   N    R + + NY   QP
Sbjct: 519 QDVVVEQTQFQKVSEHVQLGGSRKSTIQSGHHHHHHHDHENRNDVPSRPSSVANYVKHQP 578

Query: 428 NSRTN 442
           +SRT+
Sbjct: 579 HSRTS 583


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  EYASLFCLYLVYRKLCEG*RGLAVLLAKMIGTA*LQFTWN 155
           +  +L C  ++   +     G+ VL+  +IGT  +++TW+
Sbjct: 341 QIGTLCCFIILTTFMSMDYHGIGVLIVYLIGTTFIEYTWD 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,958
Number of Sequences: 27780
Number of extensions: 250221
Number of successful extensions: 619
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)