Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K20
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   2.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -1

Query: 436 SAVWLLGLVISYNRDSKSFPVVRVSGHANVHPTGSFIY 323
           S VW+  L  S  ++     ++  + +  + P GS +Y
Sbjct: 113 SRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLY 150


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -1

Query: 436 SAVWLLGLVISYNRDSKSFPVVRVSGHANVHPTGSFIY 323
           S VW+  L  S  ++     ++  + +  + P GS +Y
Sbjct: 113 SRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLY 150


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 61  YKQNKEAYSSYKLIYY 14
           Y  N   Y++YK +YY
Sbjct: 104 YNYNNNNYNNYKKLYY 119


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 95  ALTFAKFTINKI*TKQRSIFILQTHILR 12
           A T  + T NK+  + +++FIL   I+R
Sbjct: 186 AETLDEDTKNKLIEESKTVFILNNEIIR 213


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 370 RVSGHANVHPTGSFIYF 320
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 370 RVSGHANVHPTGSFIYF 320
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 370 RVSGHANVHPTGSFIYF 320
           + +GH  +HP  SF ++
Sbjct: 74  KAAGHWVIHPCSSFRFY 90


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 246 LLTRAAHASFVKHCGV 199
           +L    HASF+KH  +
Sbjct: 104 MLNSEKHASFLKHSNI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,108
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)