Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K19
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    28   2.8  
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    28   3.7  
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220...    28   3.7  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   4.9  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   4.9  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   8.5  

>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 95  AGAPWSWPTAPADPHIVQCSNQALQRARTG 6
           AG PW+W  +PA   + +C   A +R  TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 79  LQGAPASGCTNCQLRRHLRCYGQGTYN 159
           L G P  G  N  +  +LRCYG  +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328


>03_02_0798 -
           11321590-11321685,11321802-11321888,11321972-11322082,
           11322169-11322515,11322570-11322612,11322669-11322749,
           11323321-11323596,11325277-11325552
          Length = 438

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 101 PLAGAPWSWPTAPADPHIVQCSNQALQR 18
           PL+GAP   P AP  P  + C   AL +
Sbjct: 15  PLSGAPRRRPAAPTRPSALVCGTYALTK 42


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 98  AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 271
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 264 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 88
           P TL   +PA AA + IW     +P    +  SF P +     APE P  L  +  A  R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485

Query: 87  T 85
           +
Sbjct: 486 S 486


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 101 GALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 271
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,557
Number of Sequences: 37544
Number of extensions: 246524
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)