Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K18
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    91   4e-20
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    36   0.002
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    35   0.004
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    34   0.008
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    30   0.13 
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    27   0.71 
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   0.94 
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   2.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.0  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   5.0  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   6.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    24   6.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   6.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   6.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   6.7  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    24   8.8  

>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 91.5 bits (217), Expect = 4e-20
 Identities = 43/59 (72%), Positives = 47/59 (79%)
 Frame = +3

Query: 141 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL 317
           MFI++WF   L  LGL  K  K+LFLGLDNAGKTTLLHMLK+DRLA   PTLHPTSEEL
Sbjct: 1   MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEEL 59



 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 283 MFPHCIPHRKSLSIGSMRVTTFDLGGHQQA 372
           M P   P  + L+IG++R TTFDLGGHQQA
Sbjct: 48  MQPTLHPTSEELAIGNVRFTTFDLGGHQQA 77


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +3

Query: 192 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTL 296
           K+  ++L +GLD AGKTT+L+ LK   +   +PT+
Sbjct: 15  KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 49


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 195 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTL 296
           K  ++L LGLD AGKTT+L+ LK ++    +PT+
Sbjct: 20  KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTV 53


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +3

Query: 186 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPT 293
           L ++  ++L LGLDNAGKTT+L  L ++ + +  PT
Sbjct: 12  LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPT 47


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 352 DRTS*PACCLSTSSSDVGCNVGTCWASLSSFNMCSSVVLPALSRPRNRSLPDF--FQRPR 179
           ++ S P+   ST  SD G    T  +SLS+FN C S     LS   N SL  +     PR
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNFNTCDS-----LSFSSNNSLYGYSTLLHPR 481

Query: 178 NP 173
           NP
Sbjct: 482 NP 483


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 201 GKLLFL-GLDNAGKTTLLHMLKDDRLAQH 284
           G+L+ + GLD +GK+T   +L D  ++QH
Sbjct: 7   GRLIVIEGLDRSGKSTQCQLLVDKLISQH 35


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 195 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 281
           K  + L +G + AGK+TLL +L    LA+
Sbjct: 29  KGSRTLLVGANGAGKSTLLKLLSGKSLAK 57


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 357 AEIERRDPHAAYRQALPMWDAMWEHAGPVCHLSTCAVV*SCQHYLDPGTE 208
           A ++ R P +  +  + + D + +  GP+  L +C V   C  YLD   E
Sbjct: 418 AHLDERAPVSTIQDDMSVIDDLLQWKGPISELVSCKVAALC--YLDKEIE 465


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 165  GVLGFLGLWKKSGKLLFL-GLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELVD 323
            GV GF+      GKL  L G   AGKTTLL++     LAQ V T   T + LV+
Sbjct: 903  GVQGFV----VPGKLTALMGESGAGKTTLLNV-----LAQRVDTGVVTGDMLVN 947


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 195 KSGKLLFLGLDNAGKTTLLHMLKDDRL--AQHVPTLHP 302
           ++GK+  +GL N   T L  +LK  ++  A H   LHP
Sbjct: 157 ETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHP 194


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 98  EVYHNISHLLAICYVAKTDDFF 33
           EV   I++L+A CYVA++DD +
Sbjct: 111 EVIPAIAYLIA-CYVAESDDVY 131


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -1

Query: 301 GCNVGTCWA---SLSSFNMCSSVVLPALSRPRNRSLPDFFQRPRNPRTPVN 158
           G  +   WA   S++      S   PAL+ P   S+ D    P  P +P+N
Sbjct: 236 GVRIQLSWARPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPFSPIN 286


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 207 LLFLGLDNAGKTTLLHML 260
           ++  GL  AGKTTL H++
Sbjct: 419 MMLTGLAGAGKTTLAHVI 436


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 214 NRSLPDFFQRPRNPRTPVNQS 152
           N  LP F   P +  +PVNQS
Sbjct: 79  NLKLPSFLAPPNDKDSPVNQS 99


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 273 LAQHVPTLHPTSEELVDRQ 329
           L QH PT  P+S+EL++ +
Sbjct: 899 LLQHDPTKRPSSQELLESE 917


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 216 LGLDNAGKTTLLHML 260
           +GL NAGK+TLL+ L
Sbjct: 242 VGLPNAGKSTLLNCL 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,922
Number of Sequences: 5004
Number of extensions: 26879
Number of successful extensions: 113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)