Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_K17
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 4.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 5.5
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 24 7.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.3
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c... 24 7.3
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 24 7.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 24 7.3
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 23 9.6
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 23 9.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 23 9.6
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 22.6 bits (46), Expect(2) = 2.5
Identities = 7/31 (22%), Positives = 18/31 (58%)
Frame = +3
Query: 216 LKLKEIIQNHSFKEIIFLNVVYYL*ISFLIN 308
+K++E H+F++ L+ +Y+ ++ N
Sbjct: 260 IKIREAFTTHAFEQKCMLSFIYFENVALYTN 290
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +3
Query: 39 NSGSPVLQDSARGSSRLRPHRWTSTPGWKKFDTPFI 146
N+G P R + L T+ W K D+P +
Sbjct: 224 NNGLPYSFVQLRDFTLLNDRNITNVSPWTKVDSPHV 259
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 160 SHEDLMKGVSNFFQPGVEVQRCGRSLEEPRAE 65
S EDL K SNF + E Q +SLE+ R++
Sbjct: 297 SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSD 328
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 44 WIPGAAGFGTRLFKTPTTSL 103
WI A GF KTPT+ L
Sbjct: 24 WINDATGFSVASVKTPTSRL 43
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 135 YRTSSNPALKSSDVVGVLKSLVPN 64
Y S NPA + D LKSLVP+
Sbjct: 255 YNGSLNPAQQKCDGSTFLKSLVPS 278
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 232 ISLSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNF 125
+S+SF ++T L+ K + E V SH G+ NF
Sbjct: 1482 VSISFSVLTNLDNKEVNLEDAVPASHRS-ASGIVNF 1516
>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 193 KYLENEKLVLGSHED 149
++LEN+KL L SHE+
Sbjct: 53 QFLENDKLDLNSHEN 67
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 75 LVPNPAAPGIHYSRAPHRVELQLC 4
++ P A IHY +A + E+++C
Sbjct: 281 ILTGPLARIIHYEKATNTTEIRIC 304
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 187 LENEKLVLGSHEDLMKGVSNFF 122
L N+KL+ H + G+SN F
Sbjct: 726 LRNDKLIKSIHPGSLSGISNSF 747
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 28 GRSRIVDPRCCRIRHEALQDSDHIAGLQRRVGRSSIRLSL 147
G+SRI+ P + DS HI + + + + R ++
Sbjct: 13 GKSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTI 52
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 121 GRSSIRLSLSPRGNPALVSRFPNISNL 201
G ++ LSL + +P+L ++F IS L
Sbjct: 799 GYGTVGLSLGYKNDPSLTAQFRKISKL 825
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 293 YLQIIHYIKKNDFLKTMVLNNFFKF*IND 207
+L+++H ++ KT +LN+F K ND
Sbjct: 431 FLELLHLYREKLLDKTELLNSFSKLVRND 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,567
Number of Sequences: 5004
Number of extensions: 22488
Number of successful extensions: 65
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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