Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_K17
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 0.93
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 28 2.1
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 28 2.1
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 27 5.0
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656... 27 5.0
07_03_0395 + 17644813-17644921,17644961-17645084,17645545-176462... 26 6.6
10_01_0358 - 3941313-3941328,3942374-3942693,3942774-3942912,394... 26 8.7
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049... 26 8.7
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 26 8.7
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 129 TSSNPALKSSDVVGVLKSLVPNPAAPGIHYSRAPHR 22
TS P +S +S P PA+P H R+PHR
Sbjct: 839 TSMRPKARSRSSQPADRSAPPPPASPDRHSRRSPHR 874
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 27.9 bits (59), Expect = 2.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 75 GSSRLRPHRWTSTPGWKKFDT 137
GS+ ++ H+W + WKK D+
Sbjct: 523 GSNEIKNHKWFKSVNWKKLDS 543
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 178 EKLVLGSHEDLMKGVSNFFQPGVEVQRCGRSLEE 77
+KLV + E L K +S PGVE++R GR++++
Sbjct: 219 KKLVQVTRECLDKAIS-ICAPGVEIKRIGRTIQD 251
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 106 LQRRVGRSSIRLSLSPRGNPALVSRFPN 189
++RR+ S L+PRG L+SR P+
Sbjct: 8 MKRRLDEESSNPELAPRGGEDLISRLPD 35
>12_02_0750 +
22764481-22764771,22764871-22765383,22765470-22765601,
22765731-22766108
Length = 437
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 103 GLQRRVGRSSIRLSLSPRGNPALVSRFPN 189
G +RR+ S L+PRG L+SR P+
Sbjct: 7 GKKRRLDDESSNPQLAPRGGEDLISRLPD 35
>07_03_0395 +
17644813-17644921,17644961-17645084,17645545-17646268,
17646971-17647219
Length = 401
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 129 TSSNPALKSSDVVGVLKSLVPNPAAP 52
+S++PA+ S+DVV V +S P+ P
Sbjct: 93 SSASPAVASTDVVAVPRSCEATPSGP 118
>10_01_0358 -
3941313-3941328,3942374-3942693,3942774-3942912,
3943441-3943543,3944745-3944890,3944941-3945314,
3946416-3946512,3947118-3947566
Length = 547
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 42 SGSPVLQDSARGSSRLRPH-RWTSTP 116
SGSP+ D++R + PH RW P
Sbjct: 367 SGSPISMDTSRSVIAISPHGRWKVCP 392
>07_03_1698 +
28803971-28804534,28804614-28804696,28804780-28804900,
28804982-28805155,28805245-28805349,28805439-28805765
Length = 457
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +3
Query: 27 GAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKKFD 134
G L G L GS ++ H+W W+K +
Sbjct: 349 GLLHKEGGKRLGSGPGGSDEIKRHKWLKPINWRKLE 384
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 151 DLMKGVSNFFQPGVEVQRCGRSLEEPRAESCSTGDPL 41
D + S FQP + V + RS E+ S ++ DPL
Sbjct: 467 DALNTSSRHFQPPIVVMKPARSTEKQPGVSLASVDPL 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,307,890
Number of Sequences: 37544
Number of extensions: 153550
Number of successful extensions: 394
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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