Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K17
         (340 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK097054-1|BAC04937.1|  152|Homo sapiens protein ( Homo sapiens ...    29   3.7  
AK126212-1|BAC86487.1|  488|Homo sapiens protein ( Homo sapiens ...    28   6.4  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    28   8.5  
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             28   8.5  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    28   8.5  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    28   8.5  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     28   8.5  

>AK097054-1|BAC04937.1|  152|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39735 fis, clone SMINT2016286. ).
          Length = 152

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 62  LQHRGSTILERPTAWSSSFV 3
           LQH GS + ER TAWS  +V
Sbjct: 114 LQHAGSCVGERATAWSEGWV 133


>AK126212-1|BAC86487.1|  488|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44224 fis, clone THYMU3006132. ).
          Length = 488

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 PALKSSDVVGVLKSLVPNPAAPGIHYSRAPHRVE 16
           P L+ S  V +    +P+P +PG  +S  P R E
Sbjct: 70  PGLQGSPQVTLAPLPLPSPTSPGFQFSAQPRRFE 103


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
            SRm300 protein.
          Length = 2296

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 21   RGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKK 128
            RGG+  +S SP  Q+S+R SSR R  R  + P  +K
Sbjct: 1815 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 1850


>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 21  RGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKK 128
           RGG+  +S SP  Q+S+R SSR R  R  + P  +K
Sbjct: 847 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 882


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 21   RGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKK 128
            RGG+  +S SP  Q+S+R SSR R  R  + P  +K
Sbjct: 1815 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 1850


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
           protein.
          Length = 1275

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 21  RGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKK 128
           RGG+  +S SP  Q+S+R SSR R  R  + P  +K
Sbjct: 338 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 373


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 21   RGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKK 128
            RGG+  +S SP  Q+S+R SSR R  R  + P  +K
Sbjct: 1863 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRK 1898


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,087,280
Number of Sequences: 237096
Number of extensions: 854064
Number of successful extensions: 1819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)