Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K17
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    31   0.21 
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z82053-1|CAB04834.1|  233|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81061-4|CAB02932.1|  234|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 142 KGVSNFFQPGVEVQRCGRSLEEPRAESCSTGDPLF*SAPPRGAP 11
           K +  F    + +  C RSLEE    +    D LF S P R AP
Sbjct: 145 KVIKEFRVKTIRLAACSRSLEEKIVTNIQCNDALFVSEPSRNAP 188


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
           protein K09H11.3 protein.
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 19  HAVGRSRIVDPRCCRIRHEALQDSD----HIAGLQRRVGRSSIRLSLSPRGNPAL 171
           +A+ RS    PRC    +E L D+D      A LQRR    S  L++  R + A+
Sbjct: 281 NAMLRSSSAMPRCMSSGYETLSDADCLSAQTASLQRREPGPSTPLTIHRRDSEAV 335


>Z82053-1|CAB04834.1|  233|Caenorhabditis elegans Hypothetical
           protein T26E3.1 protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 3   NKAGAPRGGAL*NSGSPVLQDSARGSSRLRPHRWTSTPGWKKFDTP 140
           N  G PR G     G P    +  G+   RP       GW++F+ P
Sbjct: 29  NGGGRPRPGN--GGGRPPGNGNGNGNGGGRPTNGGCDAGWRRFNRP 72


>Z81061-4|CAB02932.1|  234|Caenorhabditis elegans Hypothetical
           protein F14H8.5 protein.
          Length = 234

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 87  VLKSLVPNPAAPGIHYSRAPHRVEL 13
           +LK ++P+P AP IH  R P R ++
Sbjct: 192 ILKEVLPDPNAPRIH--RTPTRAQI 214


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -1

Query: 223 SFKLMTVLN*K----YLENEKLVLGSHEDLMKGVSNFFQPGVEVQRCGRSLEEP 74
           +FK MT L  K    ++EN+    G+ E L+  VS+  +   EVQ+C + +  P
Sbjct: 326 TFKQMTRLESKEVAGFIENDLTAHGALEPLVVSVSSDVEWVSEVQKCQKFVAMP 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,086,735
Number of Sequences: 27780
Number of extensions: 129970
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)