Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K16
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   0.30 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   0.91 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   3.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   3.7  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    24   6.4  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 254 RYVNHNFWFSSKFS*YNSTPFLYISDFVIQTYIKNLPVYDDMIY 123
           RYV    W +++ + Y+++  L I D +++  I++ P YD +IY
Sbjct: 759 RYVK--IWANTENARYSTSNALEILDMLLREKIESAPRYDTLIY 800


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -2

Query: 176 FVIQTYIKNLPVYDDMIYSPYSACELNRNMS---ILNILYLLI 57
           F++  Y  ++P+Y  M+Y+ YS+ +    +S   I+N+  LLI
Sbjct: 295 FLLNAYQASVPIYTSMLYN-YSSFQAGNFLSLAGIINVPLLLI 336


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 238 IFGFLANLANITLRHFYIFLILS 170
           IFG +    NI LR F +F+I S
Sbjct: 126 IFGKIKQFFNILLRSFNLFIIFS 148


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 209 YNSTPFLYISDFVI-QTYIKNLPVYDDMIYSPYSACELNRNMSILNILYLLI 57
           Y+S   L++  F + +  I N   Y+D++Y    AC +   + I ++L +L+
Sbjct: 688 YSSEDALHVLKFFVRERSITNK--YEDILYKILEACFMQFRIPIQHVLNILV 737


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 LNTVNISYHHIQVDFLYRS 166
           L   NI+YH+   DFL ++
Sbjct: 324 LRAANIAYHYFSFDFLQKA 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,216
Number of Sequences: 5004
Number of extensions: 16399
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)