Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K16
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0099 - 751627-752126,752866-753056,753188-753945                 27   3.2  
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    25   9.7  

>01_01_0099 - 751627-752126,752866-753056,753188-753945
          Length = 482

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 266 IKSKRYVNHNFWFSSKFS*YNSTPFLYISDFVIQTYIKNL-PVYDDMIYSPYSACELNRN 90
           +   R V +N  +S      NS+ F+Y+       YIK+L P    +  +P ++  L+ N
Sbjct: 157 VTCSREVTNNGMYSPVACLSNSSSFVYVLTGWFANYIKSLEPSCGYLAMTPVASAWLHPN 216

Query: 89  MSILNILYLL 60
            S  +++ L+
Sbjct: 217 ASYADVVKLM 226


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 59  LIDIEYLR*TYFCLTHKLNTVNISYHHIQVDFLYRSV*QNQKY 187
           + D+   R  Y C TH +      Y H Q D + +    + KY
Sbjct: 164 MADVSLARVPYHCKTHSVYLRGALYMHCQNDCVIKITLNDHKY 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,028,047
Number of Sequences: 37544
Number of extensions: 71117
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)