Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K16
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    29   0.96 
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    27   2.9  
U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical p...    25   8.9  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    25   8.9  
AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.      25   8.9  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    25   8.9  
AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 272 WEIKSKRYVNHNFWFSSKFS*YNSTPFLYISDFVIQTYIKNLPVY 138
           +E+    Y NH+ +  +        P L ++DF+    IKN PVY
Sbjct: 526 YEMSKIEYDNHSNFSITFLDIGTGEPMLQLADFISSKGIKNRPVY 570


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 280 YIFGKSNRKDMLTIIFGFLANLANITLRHFYIFLIL 173
           Y+F  +  +D  TI+F  L+N   + +  FYI L +
Sbjct: 43  YLFKMNRERDSKTILFPILSNFYKVVI-FFYILLTI 77


>U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical
           protein F55G1.12 protein.
          Length = 266

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 152 NLPVYDDMIYSPYSACELNRNMSIL-NILYLLI 57
           +LP  D MIYS   A +L + MS L  IL +LI
Sbjct: 207 SLPKLDYMIYSETPAMDLTKFMSYLGGILSILI 239


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 185 ISDFVIQTYIKNLPVYDDMIYSPYSACELNRNMSILNIL 69
           IS  V   YI+N+ V    IY      E N+N+ I NIL
Sbjct: 52  ISYRVDSLYIENITVIPRRIYKGREYVEENKNIVIGNIL 90


>AY028166-1|AAK19022.1|  342|Caenorhabditis elegans EFL-1 protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 125 YSPYSACELNRNMSILNI 72
           YSPY  C+LN     LN+
Sbjct: 83  YSPYGRCDLNTAAEALNV 100


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 185 ISDFVIQTYIKNLPVYDDMIYSPYSACELNRNMSILNIL 69
           IS  V   YI+N+ V    IY      E N+N+ I NIL
Sbjct: 52  ISYRVDSLYIENITVIPRRIYKGREYVEENKNIVIGNIL 90


>AL031627-9|CAA20948.1|  342|Caenorhabditis elegans Hypothetical
           protein Y102A5C.18 protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 125 YSPYSACELNRNMSILNI 72
           YSPY  C+LN     LN+
Sbjct: 83  YSPYGRCDLNTAAEALNV 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,040,907
Number of Sequences: 27780
Number of extensions: 82626
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)