Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K16
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 184 IYKNGVELY*LNLLENQKLWLTYLF 258
           ++ +   L  LNL EN   W  Y F
Sbjct: 544 VFTSIASLLLLNLSENHIEWFDYAF 568


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 289 YRGYIFGKSNRKDMLTIIFGFLANLAN 209
           Y+G   GKS + D++      +  +AN
Sbjct: 408 YKGKHIGKSGKVDVINAAKELIFQIAN 434


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 250 MLTIIFGFLANLANIT 203
           ++ +I GFL  LAN T
Sbjct: 74  LVGLILGFLGRLANPT 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,003
Number of Sequences: 438
Number of extensions: 1463
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)