Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K12
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.8  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   6.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   8.7  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 270 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 151
           P+ +AL     A +Q     + +E  KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 248 IHIVRAFKIPSHISPLSTIKARFTSFIR 165
           ++I+R FK+ S  S LS IK      +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 264 QMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRN 407
           Q+ GL +  Q  +  GR+       TA    GV+  G++ +++  G N
Sbjct: 277 QISGLKRPPQATVVIGRQITRFGTLTARWKTGVWSLGSWGIASPRGAN 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,649
Number of Sequences: 5004
Number of extensions: 33399
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)