Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K08
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.016
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   0.45 
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.45 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   1.8  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   4.2  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   4.2  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   4.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   5.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   7.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   7.3  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    23   9.6  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    23   9.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   9.6  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.016
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 28  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 162
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 157 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 333
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 334 V 336
           +
Sbjct: 500 L 500


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 29  CSGRSSFYCLSLCASAFKAD 88
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 320 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 144
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 143 SSGSS 129
            S  S
Sbjct: 359 KSAKS 363


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 120
           +T++FG IVFL  +     +  R    +E VY I
Sbjct: 93  WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 245 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 141
           S+P  G     P VP + S +A   SLRT  ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 SLPAKGTLTPAPEVPSE 195
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 196 SDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 294
           SDGTS   V V   GN   I S+ G +D+ N Q
Sbjct: 442 SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQ 474


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 43  VFLLLVALCVGVQSRYLIVSEPVYYI 120
           +F++L+ LC  + S  ++V   +Y+I
Sbjct: 639 MFIMLICLCYSIISPLILVFGLIYFI 664


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 269 PIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTL-ELVNSSG 135
           PIA  +   +PA   L PA   P      AP A + ++ EL    G
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 335 TLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 195
           T SS+T   ++ S      S    + T+ ++ PA  + TP P  PS+
Sbjct: 158 TDSSSTDVSSSDSVSTSASSSNA-SNTVSVTSPASSSATPLPNQPSQ 203


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 145 IVQAPHSVEYSKQVR*QSGIGFERR 71
           ++ APH + Y  ++  ++G+ FE++
Sbjct: 142 LINAPHYLNYMYKLLIEAGVEFEKK 166


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +3

Query: 96  CQRTCLLYSTL 128
           C+RTC+L++TL
Sbjct: 252 CKRTCILFATL 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,616
Number of Sequences: 5004
Number of extensions: 22167
Number of successful extensions: 78
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)