Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K08
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0113 + 18085705-18085833,18086442-18086885                       28   2.1  
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    27   3.8  
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    27   3.8  
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119...    26   6.6  
01_07_0224 - 42121011-42122486                                         26   8.7  

>05_04_0113 + 18085705-18085833,18086442-18086885
          Length = 190

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = +1

Query: 130 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 282
           E+    TS+R R    G LT+ ++       G  GAG ++P AG D    +  G   +  
Sbjct: 30  EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89

Query: 283 TNRQKLGAATAGVALD 330
           ++   + AA+AG+  D
Sbjct: 90  SSLAAMVAASAGIQPD 105


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +1

Query: 103 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 246
           EP Y   + HY     PEL+   R   DA G + L  D   G    +P  G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209


>09_02_0322 -
           7240125-7241568,7242043-7243253,7245782-7246144,
           7246502-7246522
          Length = 1012

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 245 SLPAKGTLTPAPEVPSELSVRAP 177
           S+P + +L PAP   S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892


>11_06_0759 +
           27008772-27009571,27010457-27010576,27011683-27011957,
           27012516-27013783
          Length = 820

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 202 GTSG--AGVKVPFAGNDKNIVSAIGSLDLT 285
           G SG   GVK P  GN    +  +GS+D T
Sbjct: 531 GQSGFHGGVKFPVGGNPSKSLKVLGSIDST 560


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  FGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEP 138
           F +  F+L V LCV + +   IV  P Y +  + +P
Sbjct: 24  FVQFFFVLSVVLCVLLYAPRFIVLTPTYGLDFFPQP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,363,018
Number of Sequences: 37544
Number of extensions: 148229
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)