Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K06
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   0.71 
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   0.71 
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   0.71 
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.2  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    26   2.2  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   3.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   6.7  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 165 LSFVTPVISYLSQNYLFVDRCVLGGAYVLINVTDVFYSD 49
           LS   P+   LSQ  L    C +G  Y +IN+  + +S+
Sbjct: 261 LSMKKPISILLSQPILICVACTIGSIYGMINLVLIAFSE 299


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 165 LSFVTPVISYLSQNYLFVDRCVLGGAYVLINVTDVFYSD 49
           LS   P+   LSQ  L    C +G  Y +IN+  + +S+
Sbjct: 261 LSMKKPISILLSQPILICVACTIGSIYGMINLVLIAFSE 299


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 165 LSFVTPVISYLSQNYLFVDRCVLGGAYVLINVTDVFYSD 49
           LS   P+   LSQ  L    C +G  Y +IN+  + +S+
Sbjct: 261 LSMKKPISILLSQPILICVACTIGSIYGMINLVLIAFSE 299


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -1

Query: 345 IVAGDTVFRVSVHVPTNSGSYLG*PR--GLLPYIQ*IMVTSPALAII--SLLTY*GTGSP 178
           I    TVFR++V +  +  SY+   +  G   Y++ +      L+ +  SL+ + G+ +P
Sbjct: 376 ITMSRTVFRLNVLMTKSMDSYVVYRKNMGRNFYVKCVASNVSMLSFLGWSLILHFGSNAP 435

Query: 177 LYPELSF 157
           LYP  SF
Sbjct: 436 LYPYFSF 442


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 225 ALAIISLLTY*GTGSPLYPELSFVTPVISYL 133
           A  ++S+L   G G  LYPE+  ++    YL
Sbjct: 594 ANTVLSILLVEGAGRQLYPEMDLLSNATPYL 624


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 316 FRSRPYQFWKLFRMTQRVASIHTVDHGNIASFSHHILAYVLRDRL 182
           F + P + WK+ + T   +    V++GN+   S  ++A  +R RL
Sbjct: 236 FDTFPSELWKICQQTSDYSLSKVVEYGNMLDIS--MIASFVRQRL 278


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 189 TGSPLYPELSFVTPVISYL 133
           +GS  YPE  F+ P++ YL
Sbjct: 167 SGSNNYPENGFLNPILDYL 185


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 270 RGLLPYIQ*IMVTSPALAIISLLTY 196
           R LLPYI+  ++   AL ++SL+ Y
Sbjct: 11  RHLLPYIEHSVIPIIALLVLSLIFY 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,397,085
Number of Sequences: 5004
Number of extensions: 24656
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)