Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K06
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0084 + 657846-658538,660652-661920                               28   2.0  
08_02_1485 - 27466761-27467753                                         26   8.2  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    26   8.2  

>07_01_0084 + 657846-658538,660652-661920
          Length = 653

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 304 PYQFWKLFRMTQRVASIHTVDH-GNIASFSHHILA 203
           PYQF +LFR   R  S H +DH GN      H +A
Sbjct: 96  PYQF-RLFRWPAREYSYHHIDHDGNPLPHGRHRVA 129


>08_02_1485 - 27466761-27467753
          Length = 330

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 96  GGAYVLINVTDVFYSDDCEVEVSSRPS 16
           GG +VL +   VFY   CE   ++ P+
Sbjct: 87  GGGFVLFSTGSVFYHASCEAMAAAVPA 113


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 128 WERYEITGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 268
           WE  +  G+TK  +  +G+P PQ+ S+D M      T IY M    P
Sbjct: 15  WEFMQ-KGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,456,707
Number of Sequences: 37544
Number of extensions: 169755
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)