Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K05
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    63   2e-11
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   1.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.3  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    24   9.7  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    24   9.7  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 29/67 (43%), Positives = 44/67 (65%)
 Frame = +1

Query: 259 LKKVPMIKDEGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQL 438
           +++V M K++G VI+F  P   +SL   T AI G  E K ++E+LPGIL+ LGPE L  L
Sbjct: 56  IQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTAL 115

Query: 439 KRLASSV 459
           +++A  +
Sbjct: 116 RQMAEQL 122



 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 99  MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEK 266
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI++
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQE 58


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  ACVNN*IISLKSAARVCRE 75
           A VN  I SLKSAA+VC E
Sbjct: 637 ATVNQRITSLKSAAKVCSE 655


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 287 SSFIIGTFFNXRNGVH*QFFER 222
           +SF++  F N +NG H + +ER
Sbjct: 917 ASFLLKEFLNLKNGSHFEGYER 938


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 232 FLRDDCNFLSSVAAVTCTTF 173
           FLRD  NF++S+A ++   F
Sbjct: 412 FLRDQFNFITSIACLSLLCF 431


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 316 KAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQL 438
           K  A     TF++T H    +   +   I S +G EGL+Q+
Sbjct: 146 KRMALYYPKTFSLTDHSGKVKFDFLRNHISSMMGIEGLHQI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,853
Number of Sequences: 5004
Number of extensions: 32154
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)