Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_K05
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 66 1e-11
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 66 1e-11
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 52 3e-07
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 33 0.15
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 30 0.78
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 27 5.5
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780... 27 7.3
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 7.3
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 27 7.3
08_02_1307 + 26017525-26017784,26018746-26018857,26018906-26018998 27 9.6
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/64 (45%), Positives = 48/64 (75%)
Frame = +1
Query: 259 LKKVPMIKDEGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQL 438
+++V + KD+ VI F NPK QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L
Sbjct: 494 IEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNL 552
Query: 439 KRLA 450
+RLA
Sbjct: 553 RRLA 556
Score = 63.3 bits (147), Expect = 9e-11
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = +3
Query: 99 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEK 266
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIE+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEE 496
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/64 (45%), Positives = 48/64 (75%)
Frame = +1
Query: 259 LKKVPMIKDEGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQL 438
+++V + KD+ VI F NPK QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L
Sbjct: 55 IEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNL 113
Query: 439 KRLA 450
+RLA
Sbjct: 114 RRLA 117
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +3
Query: 96 IMNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEK 266
+MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIE+
Sbjct: 1 MMNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEE 57
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/44 (56%), Positives = 26/44 (59%)
Frame = +3
Query: 135 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEK 266
VR GGKGT RRKKK VH T TDD VNTIP IE+
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEE 48
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +1
Query: 373 KQIAEMLPGILSQLGPEGLNQLKRLASSV 459
K++ ++LPGI++QLGP+ + LKR+A +
Sbjct: 64 KELQDVLPGIINQLGPDNMEHLKRIAEEM 92
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 256 PGMVFTDNFLRDDCNFLSSVAAVTCTTFFLRLGVPLPPMRTCDCS 122
PG+VF + RD FL +V V +GVP PP R CS
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWCS 713
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -1
Query: 165 ASVYPYRRCAPATVVS-LAFPYSLCYFNVLKFSTDTRST 52
+S+Y + RCA A +V +F +S+ Y + KF++DT S+
Sbjct: 182 SSMYTWNRCAYAALVEESSFNFSMIYDSSSKFNSDTVSS 220
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 253 GMVFTDNFLRDDCNFLSSVAAVTC-TTFFLRLGV--PLPPMRTCDCSFFSFSV 104
G D FL DD FL ++ C T L++G L ++ CDC F V
Sbjct: 1035 GCTIHDGFLHDDLPFLVNLEISKCRTPSVLQVGAWPSLKCLKLCDCLDVCFLV 1087
>05_07_0339 -
29375424-29377166,29377272-29377441,29377888-29378030,
29378363-29378478,29378576-29378814,29378909-29379110,
29379212-29379430,29379657-29379724,29379806-29379812,
29380404-29380616
Length = 1039
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 384 SNLLVFTVACDGKGVRSERSLSFWIIEVYNCTFIFYH 274
SN V TV+CDG + S + E Y + ++H
Sbjct: 321 SNTAVVTVSCDGNSIISRQGTPVSSSEPYTFLYGYFH 357
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 227 ERRLQFLIVCCRCNVYNLLLAPRCTL 150
++RL F + CRCN N LAP C L
Sbjct: 4 KKRLFFAVPLCRCNDKN-SLAPSCEL 28
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 286 EGTVIHFNNPKAQASLAANTFAITGHG 366
+GTVIHFN ++ + + T + TG G
Sbjct: 568 QGTVIHFNRARSVSVHTSGTISATGLG 594
>08_02_1307 + 26017525-26017784,26018746-26018857,26018906-26018998
Length = 154
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 376 QIAEMLPGILSQLGPEGLNQLKRLA 450
+I E L L GPEGLN+L++LA
Sbjct: 86 KILETLKKHLPVSGPEGLNELQKLA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,002
Number of Sequences: 37544
Number of extensions: 214963
Number of successful extensions: 439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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