Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K04
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   2.1  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    25   2.7  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   2.7  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   2.7  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   8.3  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    24   8.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.3  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 227  ISLSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNFFQPALKTSDV 90
            +S+SF ++T L+ K +  E  V  SH     G+ NF     KT +V
Sbjct: 1482 VSISFSVLTNLDNKEVNLEDAVPASHRS-ASGIVNFDVEKGKTEEV 1526


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 134 GVSNFFQPALKTSD 93
           G+S  FQP LKTSD
Sbjct: 92  GISKSFQPVLKTSD 105


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 179 ENEKLVLGSHEDLMKGVSNFFQPALK 102
           EN  L + SH DL++ V NF   A K
Sbjct: 72  ENVLLKIASHVDLVEPVENFISTAKK 97


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 43  NDYSLGGKLNLFKTPTTSLVFNAGW 117
           ND +L       K+P T  + NAGW
Sbjct: 288 NDPNLSSGSKTLKSPMTIAIMNAGW 312


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 188 KYLENEKLVLGSHED 144
           ++LEN+KL L SHE+
Sbjct: 53  QFLENDKLDLNSHEN 67


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 188 KYLENEKLVLGSHEDLMKGVSNFFQPALKT 99
           KYLE  K++LG ++  +     F+  ++KT
Sbjct: 698 KYLEQAKVILGQNDPTVISTEKFYN-SIKT 726


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 182 LENEKLVLGSHEDLMKGVSNFF 117
           L N+KL+   H   + G+SN F
Sbjct: 726 LRNDKLIKSIHPGSLSGISNSF 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,857
Number of Sequences: 5004
Number of extensions: 19309
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)