Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K04
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    30   0.64 
01_06_1180 + 35168811-35169089,35169224-35169287,35169401-35169570     28   2.0  
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749...    28   2.6  

>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 234 LNNFFKF*INDCFKLEIFGKRETSAGF-PRGLNERRIELLPTGVEDQRRGGRLEKIQFSA 58
           L  FF F  ND  ++     R+    F P  L++  ++  P  V DQ+  G L K+    
Sbjct: 775 LAEFFSFGTNDLTQMTFGYSRDDVGKFLPTYLSKGILQNDPFEVFDQKGVGELVKVAVER 834

Query: 57  QRVVVAVKDIGVCG 16
            R      ++G+CG
Sbjct: 835 GRKARPDLEVGICG 848


>01_06_1180 + 35168811-35169089,35169224-35169287,35169401-35169570
          Length = 170

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 195 KLEIFGKRETSAGFPRGLNERRIELLPTGVEDQRRGGRLEKIQFSAQR 52
           K  +FG    +  F +  +E+  ELL    E  + GGR+ K Q+ A R
Sbjct: 51  KQSLFGSITEALDFSQVRSEKDAELLYEAREATKDGGRMTKEQYGALR 98


>05_04_0268 - 19574540-19574582,19574664-19574755,19574843-19574920,
            19575095-19575232,19575478-19575606,19575889-19576018,
            19576171-19576348,19576715-19576853,19577031-19577120,
            19577260-19577421,19577556-19577720,19577909-19578046,
            19578657-19578836,19579129-19579257,19579442-19579677,
            19579795-19579957,19580030-19580070,19580162-19580489,
            19581416-19581553,19581670-19581873
          Length = 966

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 225  FFKF*INDCFKLEIFGKRETSAGF-PRGLNERRIELLPTGVEDQRRGGRLEKIQFSAQRV 49
            FF F  ND  ++     R+    F P  L++  ++  P  V DQR  G L K+     R 
Sbjct: 857  FFSFGTNDLTQMTFGYSRDDVGKFLPIYLSQGILQHDPFEVLDQRGVGELVKLATERGRK 916

Query: 48   VVAVKDIGVCG 16
                  +G+CG
Sbjct: 917  ARPNLKVGICG 927


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,398
Number of Sequences: 37544
Number of extensions: 114959
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)