Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K02
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    39   0.002
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    39   0.002
03_05_0007 - 19536239-19536532,19536937-19537047,19537126-195376...    27   5.9  

>11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,
            3650306-3650815,3651700-3653757
          Length = 968

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +2

Query: 38   GHVRIRAKSQAMALSLGDKINMMQK 112
            G++RIR+K+Q +ALSLGDKI + QK
Sbjct: 940  GYIRIRSKTQGIALSLGDKITLKQK 964


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +2

Query: 38  GHVRIRAKSQAMALSLGDKINMMQK 112
           G++RIR+K+Q +ALSLGDKI + QK
Sbjct: 923 GYIRIRSKTQGIALSLGDKITLKQK 947


>03_05_0007 -
           19536239-19536532,19536937-19537047,19537126-19537690,
           19537737-19537822
          Length = 351

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 164 KVKPPGWGGQP--AASAVRLSASC*FCLRG 81
           K  PP W G+P   A  +R S+SC   L G
Sbjct: 7   KSSPPPWSGRPRIGARKIRRSSSCCITLEG 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,621
Number of Sequences: 37544
Number of extensions: 138029
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)