Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K02
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037280-1|AAH37280.1|  953|Homo sapiens coatomer protein comple...    58   2e-08
AF111807-1|AAL39009.1|  953|Homo sapiens MSTP026 protein.              58   2e-08
X82103-1|CAA57622.1|  303|Homo sapiens beta-Coat protein protein.      55   1e-07
AF084457-1|AAD41240.1|  953|Homo sapiens beta-cop homolog protein.     55   1e-07

>BC037280-1|AAH37280.1|  953|Homo sapiens coatomer protein complex,
            subunit beta 1 protein.
          Length = 953

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 27/38 (71%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2    ELPLHR-PNAPVVGHVRIRAKSQAMALSLGDKINMMQK 112
            E P+H+ P+A V GH+RIRAKSQ MALSLGDKIN+ QK
Sbjct: 912  EKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949


>AF111807-1|AAL39009.1|  953|Homo sapiens MSTP026 protein.
          Length = 953

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 27/38 (71%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2    ELPLHR-PNAPVVGHVRIRAKSQAMALSLGDKINMMQK 112
            E P+H+ P+A V GH+RIRAKSQ MALSLGDKIN+ QK
Sbjct: 912  EKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949


>X82103-1|CAA57622.1|  303|Homo sapiens beta-Coat protein protein.
          Length = 303

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 27/38 (71%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2   ELPLHR-PNAPVVGHVRIRAKSQAMALSLGDKINMMQK 112
           E PLH+ P+A V  H+RIRAKSQ MALSLGDKIN+ QK
Sbjct: 262 EKPLHQGPDAAVTVHIRIRAKSQGMALSLGDKINLSQK 299


>AF084457-1|AAD41240.1|  953|Homo sapiens beta-cop homolog protein.
          Length = 953

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 27/38 (71%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2    ELPLHR-PNAPVVGHVRIRAKSQAMALSLGDKINMMQK 112
            E PLH+ P+A V  H+RIRAKSQ MALSLGDKIN+ QK
Sbjct: 912  EKPLHQGPDAAVTVHIRIRAKSQGMALSLGDKINLSQK 949


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,993,765
Number of Sequences: 237096
Number of extensions: 770790
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)