Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K01
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.8  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   4.8  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   6.4  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   6.4  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
 Frame = +1

Query: 4    KQLRIETSEMILTITVL--SALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSV 177
            ++L IE   +++ +  +  S  V  ++L  +S+L       E++S   +      L+D V
Sbjct: 720  EKLNIELLNLLINVVFVTESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKV 779

Query: 178  VVGDYKAAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVQDHFP 357
              G  K         E++   +V+  V   L+S      +  A+KL +      V D   
Sbjct: 780  YTGTPK---------ESEAALDVLAWVDKALVSRKHSEGIPLAFKLLDTLNLQNVGDSSV 830

Query: 358  KEFRMFLNEDPVL 396
            K   + + +DP L
Sbjct: 831  KALSIIIKDDPAL 843


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 395 NTGSSFKNILNSFGK*SWTMFVPNMFHSL*AYSTMFLLPSESSLFTTRFITSPXPSFSN 219
           +TG+   N L+S      T ++PN   S+ A ST  L  +  S  T+   TS  PS S+
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASS 586


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 4   KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 171
           KQ     S+ I  + + S +    S  +  L+  T A+I Y  EE+ PLN  N Y    D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371

Query: 172 SVVVGD 189
           + +V D
Sbjct: 372 TSIVLD 377


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 46  TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 153
           +V S   T AS TPLS++          +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 55  SALVTQASLTPLSNLTVAFINYEELSPLNNINS 153
           S   T AS TPLS++          +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 259 VNRLLSEGKRNIVEYAYKLWNMFGTNIVQDHFPKEF 366
           V+RLL   KRN+  +   + + +  NI++++  KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 295 VEYAYKLWNMFGTNIVQDHFPKEFR 369
           V+ A   W    TN+ +D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 381 VQKHSKLFWEVILDY 337
           V KH KLFW V  DY
Sbjct: 4   VGKHVKLFWNVYSDY 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,530
Number of Sequences: 5004
Number of extensions: 42447
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)