Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_K01
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68120-2|CAA92200.1|  218|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.4 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 AAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIV-EYAYKLWNMFGTN 336
           AA +  L+LE D   E  + ++   + EG +    EYA K WN+ G++
Sbjct: 256 AARLNILQLETDNEIESTHQLITSCMPEGYQLTEWEYALKFWNINGSS 303


>Z68120-2|CAA92200.1|  218|Caenorhabditis elegans Hypothetical
           protein T24C2.2 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +1

Query: 136 LNNINSYEQLYDSVVVG-DYKAAVMKTLRLENDGXGEVI--NLVVNR--LLSEGKRNIVE 300
           + N NS  +   +++V  D K A++  LRL+ DG    +  N + +   +L E K+  VE
Sbjct: 27  VENYNSENRFERTIIVANDNKTAILLILRLKQDGVKTSVFTNYLADDEIVLGEQKKAFVE 86

Query: 301 YAYKL 315
            A+K+
Sbjct: 87  GAHKV 91


>U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical
           protein F22D3.2b protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 33  DFNDNGAECTGDASV-PYTSKQPHGCI 110
           D +D GA CT   S+ P TS  P G I
Sbjct: 27  DVDDKGASCTASTSLGPSTSSSPPGII 53


>U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical
           protein F22D3.2a protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 33  DFNDNGAECTGDASV-PYTSKQPHGCI 110
           D +D GA CT   S+ P TS  P G I
Sbjct: 27  DVDDKGASCTASTSLGPSTSSSPPGII 53


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  NRDQR-NDFNDNGAECTGDASVPYTSKQPHGCIY*LRR 125
           +R+Q+  DFND+ A  T   + PY S  P+  +Y  R+
Sbjct: 811 DREQKWFDFNDSSANPTYPPAEPYESSDPYILVYRRRK 848


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,865
Number of Sequences: 27780
Number of extensions: 238384
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)