Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J24
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 0.84
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 0.84
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 27 1.1
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 25 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.9
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 24 7.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 7.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 24 7.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 24 7.8
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 0.84
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 240 INNRKGWSRAPSARGSPFLSDVFFSLGPLERLLKRSFRFEHSRCR 374
IN KG+ P+A S F D FF G +L K + F R +
Sbjct: 361 INVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIK 405
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.5 bits (58), Expect = 0.84
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 403 DDKSHVSNETRQRECSKRNDRFNKRSRGP-REKKTSLK-NGEPRALGA 266
++KSH NE+ + +K + F +++ P ++KK S K NG P L A
Sbjct: 262 EEKSHGENESGGKLKNKMSTLFRRKTIMPKKDKKPSHKSNGRPNKLTA 309
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 354 NEMIVSINVREDRERRKHHSKTG 286
+++ ++ V D++RRKH+ KTG
Sbjct: 77 DKVAIAYGVLSDKKRRKHYDKTG 99
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 163 MLHVVCKMIHESPGVSAVRLTDSNR 237
+L +CKMI+E P + A+ T+ ++
Sbjct: 110 LLKELCKMINEEPELKAIEDTEESK 134
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 303 HHSKTGNRARSAPGTTLFYYLSSVRVRQTHS 211
H S + +++ SAP ++ FY+ S+ +HS
Sbjct: 406 HKSSSSSKSSSAPVSSAFYHNSTSSRSSSHS 436
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -2
Query: 373 RQRECSKRNDRFNKRSRGPREKKTSLKNGEPRALGARDHPFLLFIICSSPSNAQRRR 203
R+R +K+ D+ +R + P+ + + G+ HP S+ NA+ RR
Sbjct: 62 RERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHPVDATGAPSNRRNARARR 118
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 313 EKKTSLKNGEPRALGARDHPFLLFIICSS 227
EK+T+LKN + L + ++ ICSS
Sbjct: 232 EKQTTLKNSSLKELCTEEDIVIMLEICSS 260
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.2 bits (50), Expect = 7.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 339 SINVREDRERRKHHSKTGNR--ARSAPGTTLFYYLSSVRVRQTHSGDAR*FVNHFTDHM* 166
S N R+ ERR+ + GNR R+ T S ++R+ S D FT+
Sbjct: 1380 SANERKQEERRRKTTPEGNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTN--- 1436
Query: 165 HHINNIRDIVTH 130
+ +N+R + H
Sbjct: 1437 ENNDNLRSVSRH 1448
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 52 SRGARVSFIKMFRVLVKRSRARPL 123
S+ + +SF K FR+L S RPL
Sbjct: 336 SKNSLMSFYKAFRILYALSDRRPL 359
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -3
Query: 381 TKRDSENVQNEMIVSINVREDRERRKHHSKTGNRARSAPGTTLFYYLSSVRVRQTHSG 208
T + + + +E + +V +D ERR ++ RS+ YY R R SG
Sbjct: 500 TDANGDPLWSEWFYNPDVDDDLERRMRYAPLMRPVRSSRRVHKQYYWKKPRARPRSSG 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,665
Number of Sequences: 5004
Number of extensions: 23993
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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