Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J24
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0230 + 15872505-15872851,15872963-15873140 30 0.80
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 28 3.2
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 27 5.6
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361... 27 5.6
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 27 5.6
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 27 7.5
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 27 7.5
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 26 9.9
02_05_0365 - 28309587-28310132 26 9.9
>09_04_0230 + 15872505-15872851,15872963-15873140
Length = 174
Score = 29.9 bits (64), Expect = 0.80
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 388 VSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEPRAL 272
+++E R+R+ + +R R PR +++ G PR L
Sbjct: 132 MTDEARERDAMAKKERLGLHHRTPRPPPAAIRGGSPRRL 170
>09_04_0634 - 19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = -2
Query: 394 SHVSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEPRALGARDHPFLLFIICSSPSNA 215
+ S ET++++ + + + R R ++ +S K+G P+ GA D+ F P N
Sbjct: 887 AEASVETKEKKTTAKERVLSFRRRVSKDDSSSAKSGSPKP-GADDNKF-WSSPARLPENN 944
Query: 214 QRRRPVIRESFYRPHVTSYKQH 149
++ R+ + P + + H
Sbjct: 945 AEKKSKARKQPWMPFICCHSVH 966
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 403 DDKSHVSNETRQRECSKRNDRFNKRSRGPREK--KTSLKNGEPRALGARDHPFLLFIICS 230
D+++ +++ET++ +C+ ++D K SR R K K L+ L ++H +
Sbjct: 321 DNQTKLNSETKEDDCNTQSD-IKKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTVAD 379
Query: 229 SPSNAQR 209
PS+ R
Sbjct: 380 CPSSNNR 386
>09_02_0052 -
3616013-3616033,3616116-3616514,3617925-3618094,
3619691-3620732
Length = 543
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 214 QRRRPVIRESFYRPHVTSYKQHS*Y 140
Q +RP S Y PH+TS+ S Y
Sbjct: 460 QSKRPRANGSVYAPHITSFSDKSFY 484
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 372 DSENVQNEMIVSINVREDRERRKHHSKTGNRARSA 268
+ + V+ E+ V + V +RER + + RAR A
Sbjct: 55 EEQEVEVEVEVEVGVERERERERERERERERARKA 89
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 403 DDKSHVSNETRQRECSKRNDRFNKRSRGPREKKTS 299
D+ S S+ T +C+ N + S P+EK TS
Sbjct: 213 DEHSRSSHGTGDFDCASNNGSCSGESEDPKEKSTS 247
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 403 DDKSHVSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEP 281
DD HVS +TR+ C K GP +LKN +P
Sbjct: 100 DDFYHVSRDTREVSCDTCQSGSTKDVAGP--SSIALKNVDP 138
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 370 QRECSKRNDRFNKRSRGPREKKTSLKNGEPRALGARDHPF 251
+R C KR D N+R R P+ + + GAR PF
Sbjct: 175 KRSCRKRLDGHNRRRRKPQPDPMNSASYLASQQGARFSPF 214
>02_05_0365 - 28309587-28310132
Length = 181
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 246 NRKGWSRAPSARGSPFLSDVFFS 314
NRK W + PFL +VFFS
Sbjct: 71 NRKSWKQRTDMYMRPFLLNVFFS 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,543,364
Number of Sequences: 37544
Number of extensions: 149970
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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