Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J24
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 0.73
U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily ass... 29 0.96
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 29 1.3
U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 28 2.9
U32305-3|AAK18862.2| 201|Caenorhabditis elegans Hypothetical pr... 28 2.9
U32305-2|AAZ82852.1| 204|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 27 3.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 27 3.9
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 27 5.1
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 27 5.1
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 6.8
U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical pr... 27 6.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 9.0
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.9 bits (64), Expect = 0.73
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 400 DKSHVSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEPRA 275
D+S + R RE S+ +R RSR P+E+ S R+
Sbjct: 126 DRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSKSRSRS 167
>U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 226 protein.
Length = 560
Score = 29.5 bits (63), Expect = 0.96
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 403 DDKSHVSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEPRALGARD 260
D+K + + + + KRN++ NK+ E+K+S +NG + G D
Sbjct: 503 DEKKALKDSEKNKR--KRNNKKNKKIEQKNEQKSSGENGNSKTKGVED 548
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 363 NVQNEMIVSINVREDRERRKHHSKTGNRARSAPGTTLFYYLSS 235
N+ N I I+ + + R+ + N A+ PG ++YY S
Sbjct: 181 NLNNNQIAKISSEQSSKSRRKKRQIDNLAQFWPGKVVYYYFDS 223
>U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical
protein C05D10.4b protein.
Length = 597
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = -2
Query: 268 ARDHPFLLFIICSSPSNAQRRRPVIRESFYRPHVT----SYKQHS 146
A+ P LF+ P QR +R S PHV+ SY+ HS
Sbjct: 31 AKASPIHLFVFLREPMIEQRWPTTVRNSSIHPHVSSAHPSYRSHS 75
>Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical
protein R05H10.1 protein.
Length = 250
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 390 TSVTKRDSENVQNEMIVSINVR-EDRERRKHHSKTGNRARSAPGTTLFYYLSSVR 229
T VT D EN+ ++ S+ R ED ER KH + G+ S L +++ V+
Sbjct: 61 TVVTTEDGENIVAVLLNSMWSREEDEERMKHGNGKGDHDTSGYSEALQRFMTIVQ 115
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 397 KSHVSNETRQRECSKRNDRFNKRSRGPR-EKKTSLKN 290
+S ++ RQR +R DR RSR R EK+ + KN
Sbjct: 474 RSRSTSRRRQRSKDRRRDRSRDRSRDERNEKRRTSKN 510
>U32305-3|AAK18862.2| 201|Caenorhabditis elegans Hypothetical
protein B0336.5a protein.
Length = 201
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 318 RERRKHHSKTGNRARSAPGTTLFYYL 241
R+ HH KTG + +A G TLF+ L
Sbjct: 112 RDEPLHHDKTGKLSVTAKGQTLFFDL 137
>U32305-2|AAZ82852.1| 204|Caenorhabditis elegans Hypothetical
protein B0336.5b protein.
Length = 204
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 318 RERRKHHSKTGNRARSAPGTTLFYYL 241
R+ HH KTG + +A G TLF+ L
Sbjct: 115 RDEPLHHDKTGKLSVTAKGQTLFFDL 140
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 243 NNRKGWSRAPSARGSPFLSDVFFS 314
N+RK WSR+ R +++D ++S
Sbjct: 346 NDRKRWSRSSEPRSETYINDPYYS 369
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 243 NNRKGWSRAPSARGSPFLSDVFFS 314
N+RK WSR+ R +++D ++S
Sbjct: 568 NDRKRWSRSSEPRSETYINDPYYS 591
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 306 KHHSKTGNRARSAPGTTLFYYLSSVRVRQTHS 211
KH KT NR R PG T Y L +RQ +S
Sbjct: 856 KHKKKTLNRKRVHPGVT--YRLDDSTIRQCNS 885
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 306 KHHSKTGNRARSAPGTTLFYYLSSVRVRQTHS 211
KH KT NR R PG T Y L +RQ +S
Sbjct: 856 KHKKKTLNRKRVHPGVT--YRLDDSTIRQCNS 885
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 397 KSHVSNETRQRECSKRNDRFNKRSRGPREKKTSLKNGEPRALGAR 263
+S + +R R SK ++RSR ++ S K G P + +
Sbjct: 66 QSRSRSRSRSRSRSKSRSTSSRRSRSRSARRVSFKRGRPASFAMK 110
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 367 RECSKRNDRFNKRSRGPREKKTS 299
+ CSKR+ + N + + REKK++
Sbjct: 94 KNCSKRSKKHNTKQKSKREKKSA 116
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 379 ETRQRECSKRNDRFNKRSRGPREKKTSLK 293
+T E K D F KRS P+E++ ++
Sbjct: 460 KTANEEADKNLDEFEKRSEAPKEEQKKIQ 488
>U28739-9|AAB93451.1| 480|Caenorhabditis elegans Hypothetical
protein C17G10.1 protein.
Length = 480
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 228 LEQMINNRKGWSRAPSARGSPFLSDVFFSLGPLERLLKRSFR 353
+E + N +GW R + S + SD S+ P+E SFR
Sbjct: 75 IEDELQNFEGWKRKENDLYSLYQSDDLKSINPVENPAVFSFR 116
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 378 KRDSENVQNEMIVSINVREDRERRKHHSKTGNRARSAPGTT 256
K D V NE++ I + E + H K +++ + TT
Sbjct: 9036 KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKSKKTT 9076
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 378 KRDSENVQNEMIVSINVREDRERRKHHSKTGNRARSAPGTT 256
K D V NE++ I + E + H K +++ + TT
Sbjct: 9056 KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKSKKTT 9096
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 378 KRDSENVQNEMIVSINVREDRERRKHHSKTGNRARSAPGTT 256
K D V NE++ I + E + H K +++ + TT
Sbjct: 9056 KLDDVQVNNEVVTEITIEESEVTIEEHRKLKKKSKKSKKTT 9096
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,596,326
Number of Sequences: 27780
Number of extensions: 137613
Number of successful extensions: 524
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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