Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J23
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0707 - 24468329-24468448,24468794-24468940,24469050-244691...    31   0.47 
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    28   3.3  

>01_05_0707 -
           24468329-24468448,24468794-24468940,24469050-24469103,
           24469185-24469300,24470537-24470583,24470686-24470723,
           24471050-24471268,24471504-24471602,24471675-24471728,
           24472907-24473148,24474258-24474447
          Length = 441

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -2

Query: 231 CPWGIEMAGC*ICASCRIRHEERFLLN--------*TQSPRNLYFHSFGKYDEIFNFHPI 76
           CP+ ++M  C   ++CR  H +R +LN           +P ++  +S   + + F+FH  
Sbjct: 273 CPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSSANFMQGFDFHAA 332

Query: 75  YFTI 64
           +  +
Sbjct: 333 HMPV 336


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 164 GFYLTEPSHLETFIFIVLGNMMKYLIFI 81
           G +L    HL   +F +LGN++ +L+F+
Sbjct: 437 GLFLFSMDHLWASVFGILGNIVSFLVFL 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,015
Number of Sequences: 37544
Number of extensions: 179791
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)