Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J23
         (472 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109063-1|AAI09064.1|  485|Homo sapiens tripartite motif-contai...    29   8.1  
BC075058-1|AAH75058.1|  485|Homo sapiens tripartite motif-contai...    29   8.1  
AY005802-1|AAF91075.1|  319|Homo sapiens GC109 protein.                29   8.1  
AK022923-1|BAB14309.1|  262|Homo sapiens protein ( Homo sapiens ...    29   8.1  
AK001231-1|BAA91569.1|  262|Homo sapiens protein ( Homo sapiens ...    29   8.1  
AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein...    29   8.1  
AF360739-1|AAL11501.1|  485|Homo sapiens SSA protein SS-56 protein.    29   8.1  

>BC109063-1|AAI09064.1|  485|Homo sapiens tripartite
           motif-containing 68 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 345 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 375


>BC075058-1|AAH75058.1|  485|Homo sapiens tripartite
           motif-containing 68 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 345 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 375


>AY005802-1|AAF91075.1|  319|Homo sapiens GC109 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 237 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 267


>AK022923-1|BAB14309.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12861 fis, clone NT2RP2003564, weakly similar to
           52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN
           (SS-A)). ).
          Length = 262

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 122 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 152


>AK001231-1|BAA91569.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10369 fis, clone NT2RM2001575, weakly similar to
           52 KD RO PROTEIN. ).
          Length = 262

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 122 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 152


>AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein
           FLJ10369 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 345 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 375


>AF360739-1|AAL11501.1|  485|Homo sapiens SSA protein SS-56 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 NIVLWVSCFDWGVLVWYLSLGNRNGWLLNLC 191
           NIVL   C   G   W + +G+R+ W L +C
Sbjct: 345 NIVLGSQCISSGRHYWEVEVGDRSEWGLGVC 375


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,101,846
Number of Sequences: 237096
Number of extensions: 1133631
Number of successful extensions: 5565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5565
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)