Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J23
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    27   6.8  
Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    27   9.0  
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    27   9.0  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 132 NLYFHSFGKYDEIFNFHPIYFTI 64
           N YFH+  + D +FNF+ +Y  +
Sbjct: 92  NEYFHNVCELDLVFNFYKVYTVV 114


>Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical
           protein F09C3.4 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 135 RNLYFHSFGKYDEIFNFHPIYFTIQLLSNQSLKQQVL 25
           ++L  HSF   D + N    + TIQLL     K Q+L
Sbjct: 224 QHLKIHSFVNLDPLINHISHFHTIQLLCQSMSKLQML 260


>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 107 NMMKYLIFIQFILLYSFYPINL*SSRSFLFDRLIY 3
           N    LI +  + LY+FY I    +RSFL+   IY
Sbjct: 154 NFFMILILVLILQLYNFYEI----ARSFLYSTAIY 184


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 132 NLYFHSFGKYDEIFNFHPIYFTIQLL 55
           NL   SFG+   +F + P+YFTI ++
Sbjct: 212 NLLKQSFGQAIYLFIYIPVYFTIPMI 237


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 321 VYNYFLRHCVNY*ILYYGFPVLTGGFWFGTCPWGIE 214
           VY  FL  C ++ + + G   ++G  W G C W +E
Sbjct: 548 VYRAFLA-CNSHELGFSGKEPISGRKWSGVCRWNVE 582


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 210 PFLFPKDKYQTKTPQSKQETHNTIFNN*HND 302
           PF   ++K +T TP    E H +  +N HND
Sbjct: 110 PFYDSREKERTPTPLDCSEAHVSHSSNAHND 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,701,507
Number of Sequences: 27780
Number of extensions: 190804
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)