Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J21
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 481 RHVSYLPRRGETIT*IRIFNIRMFV 407
           + ++YL R G+T+T I + +  MF+
Sbjct: 317 KFLNYLKRGGKTLTSISVESNTMFI 341


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 210 NYYLQNSYY*CNSDYGTLFHLLQ 142
           NY   N+Y   N++Y T +  LQ
Sbjct: 91  NYNYNNNYNNYNNNYNTNYKKLQ 113


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 227 SIAKYLIIICKIATINVTATMERSST 150
           S  K L+I+C +    VTA  E   +
Sbjct: 3   SAIKALLIVCALFIYTVTAETEEGQS 28


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 354 ESGKSRCELCGTRY 313
           E G S+C LC  R+
Sbjct: 268 EFGDSKCSLCQRRF 281


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 227 SIAKYLIIICKIATINVTATMERSST 150
           S  K L+I+C +    VTA  E   +
Sbjct: 3   SAIKALLIVCALFIYTVTAETEEGQS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,528
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)