Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J16
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 0.57
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 1.3
04_03_0916 + 20794240-20794246,20794585-20796545 29 1.3
04_03_0913 + 20777859-20780309 28 4.0
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 5.3
09_03_0172 - 13072575-13073800,13075919-13076054 27 5.3
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 27 5.3
11_04_0009 - 12132781-12133272 27 7.1
05_06_0268 + 26792845-26792891,26793050-26793830 27 7.1
04_03_0914 + 20788103-20789642,20790036-20790529 27 7.1
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 27 9.3
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 9.3
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 27 9.3
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 394
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 368 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 252
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 394
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 394
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 386 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 282
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 434 QRVVITIKDIGVSGGRRCTNLVLEHVV 354
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +3
Query: 6 CAGSGCTNCQLNAPQCY--GQYLYW 74
C G G C AP C G YL+W
Sbjct: 305 CCGGGVGGCNGTAPLCLDRGSYLFW 329
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 315 PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 440
P V +F+ G GVD M + + A+A++A D+S GG
Sbjct: 19 PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 283 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPLTP 405
KH ++TC + + + + + +P+W ++ + +PP TP
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 394
QP+ QC P +EL +C C G + +DW + DR
Sbjct: 289 QPKSQCDVYAVCGPYTICIDNELPNCNCIKGFTITSHEDWELEDR 333
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 255 HNDNHDFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKDKIG 380
+ND H + A++ N P + + N N V+Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 363 TCSPLRHRQC*SSELEEYLAGF*WRMLW 280
TCSP+ + + +LEE++ F R LW
Sbjct: 339 TCSPIANGGIGALDLEEFICAFHVRWLW 366
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 255 HNDNHDFSAKAFATKNLPNI--PQVPNFNTVGAGVDYMFKDKIGASATAAHT 404
+ D+ DF+ + F+T PN+ P VP + + A + + +AT +HT
Sbjct: 263 NEDDDDFNPRGFSTSTTPNVSTPAVPEVD-LFADAAFQSANAPLEAATVSHT 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,800
Number of Sequences: 37544
Number of extensions: 299151
Number of successful extensions: 743
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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